• using R version 2.10.0 Patched (2009-11-22 r50534)
• using session charset: UTF-8
• checking for file 'multcomp/DESCRIPTION' ... OK
• this is package 'multcomp' version '1.1-2'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'multcomp' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking differences from 'multcomp-Ex.Rout' to 'multcomp-Ex.Rout.save' ...
  4,5c4,5
  < > cleanEx()
  < > nameEx("cftest")
  ---
  > > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
  > > cleanEx(); nameEx("cftest")
  63,64c63
  < > cleanEx()
  < > nameEx("cholesterol")
  ---
  > > cleanEx(); nameEx("cholesterol")
  146,155c145,154
  < 2times - 1time == 0 3.443 1.443 2.385 0.0420 *
  < 4times - 1time == 0 6.593 1.443 4.568 <0.001 ***
  < drugD - 1time == 0 9.579 1.443 6.637 <0.001 ***
  < drugE - 1time == 0 15.166 1.443 10.507 <0.001 ***
  < 4times - 2times == 0 3.150 1.443 2.182 0.0420 *
  < drugD - 2times == 0 6.136 1.443 4.251 <0.001 ***
  < drugE - 2times == 0 11.723 1.443 8.122 <0.001 ***
  < drugD - 4times == 0 2.986 1.443 2.069 0.0443 *
  < drugE - 4times == 0 8.573 1.443 5.939 <0.001 ***
  < drugE - drugD == 0 5.586 1.443 3.870 <0.001 ***
  ---
  > 2times - 1time == 0 3.443 1.443 2.385 0.042005 *
  > 4times - 1time == 0 6.593 1.443 4.568 0.000156 ***
  > drugD - 1time == 0 9.579 1.443 6.637 1.11e-06 ***
  > drugE - 1time == 0 15.166 1.443 10.507 3.81e-14 ***
  > 4times - 2times == 0 3.150 1.443 2.182 0.042005 *
  > drugD - 2times == 0 6.136 1.443 4.251 0.000289 ***
  > drugE - 2times == 0 11.723 1.443 8.122 1.63e-09 ***
  > drugD - 4times == 0 2.986 1.443 2.069 0.044316 *
  > drugE - 4times == 0 8.573 1.443 5.939 1.35e-06 ***
  > drugE - drugD == 0 5.586 1.443 3.870 0.000696 ***
  182,186c181,185
  < 2times - 1time == 0 -5.586 1.443 -3.870 <0.001 ***
  < 4times - 1time == 0 -8.573 1.443 -5.939 <0.001 ***
  < 4times - 2times == 0 -2.986 1.443 -2.069 0.0443 *
  < D - test == 0 -21.009 3.536 -5.942 <0.001 ***
  < E - test == 0 -31.338 3.536 -8.864 <0.001 ***
  ---
  > 2times - 1time == 0 -5.586 1.443 -3.870 0.000348 ***
  > 4times - 1time == 0 -8.573 1.443 -5.939 1.03e-06 ***
  > 4times - 2times == 0 -2.986 1.443 -2.069 0.044316 *
  > D - test == 0 -21.009 3.536 -5.942 1.03e-06 ***
  > E - test == 0 -31.338 3.536 -8.864 1.09e-11 ***
  194,195c193
  < > cleanEx()
  < > nameEx("cld")
  ---
  > > cleanEx(); nameEx("cld")
  203a202
  > >
  249,250c248
  < > cleanEx()
  < > nameEx("contrMat")
  ---
  > > cleanEx(); nameEx("contrMat")
  371,372c369
  < > cleanEx()
  < > nameEx("detergent")
  ---
  > > cleanEx(); nameEx("detergent")
  481,490c478,487
  < B - A == 0 -2.1333 0.8679 -2.458 0.05002 .
  < C - A == 0 3.6000 0.8679 4.148 0.00275 **
  < D - A == 0 2.2000 0.8679 2.535 0.04297 *
  < E - A == 0 -4.3333 0.8679 -4.993 < 0.001 ***
  < C - B == 0 5.7333 0.8679 6.606 < 0.001 ***
  < D - B == 0 4.3333 0.8679 4.993 < 0.001 ***
  < E - B == 0 -2.2000 0.8679 -2.535 0.04297 *
  < D - C == 0 -1.4000 0.8679 -1.613 0.12629
  < E - C == 0 -7.9333 0.8679 -9.140 < 0.001 ***
  < E - D == 0 -6.5333 0.8679 -7.527 < 0.001 ***
  ---
  > B - A == 0 -2.1333 0.8679 -2.458 0.050022 .
  > C - A == 0 3.6000 0.8679 4.148 0.002751 **
  > D - A == 0 2.2000 0.8679 2.535 0.042967 *
  > E - A == 0 -4.3333 0.8679 -4.993 0.000489 ***
  > C - B == 0 5.7333 0.8679 6.606 6.98e-05 ***
  > D - B == 0 4.3333 0.8679 4.993 0.000489 ***
  > E - B == 0 -2.2000 0.8679 -2.535 0.042967 *
  > D - C == 0 -1.4000 0.8679 -1.613 0.126291
  > E - C == 0 -7.9333 0.8679 -9.140 5.19e-07 ***
  > E - D == 0 -6.5333 0.8679 -7.527 6.98e-05 ***
  499,500c496
  < > cleanEx()
  < > nameEx("glht")
  ---
  > > cleanEx(); nameEx("glht")
  563d558
  < >
  637,638c632
  < > cleanEx()
  < > nameEx("litter")
  ---
  > > cleanEx(); nameEx("litter")
  789,790c783
  < > cleanEx()
  < > nameEx("methods")
  ---
  > > cleanEx(); nameEx("methods")
  904d896
  < >
  933,934c925
  < > cleanEx()
  < > nameEx("parm")
  ---
  > > cleanEx(); nameEx("parm")
  977,978c968
  < > cleanEx()
  < > nameEx("plot.cld")
  ---
  > > cleanEx(); nameEx("plot.cld")
  1075a1066,1083
  > Attaching package: 'Matrix'
  >
  >
  > The following object(s) are masked from package:stats :
  >
  > contr.helmert,
  > contr.poly,
  > contr.SAS,
  > contr.sum,
  > contr.treatment,
  > xtabs
  >
  >
  > The following object(s) are masked from package:base :
  >
  > rcond
  >
  >
  1082d1089
  < VarCorr,
  1085c1092,1093
  < ranef
  ---
  > ranef,
  > VarCorr
  1091,1092c1099
  < > cleanEx()
  < > nameEx("recovery")
  ---
  > > cleanEx(); nameEx("recovery")
  1160,1161c1167
  < > cleanEx()
  < > nameEx("trees513")
  ---
  > > cleanEx(); nameEx("trees513")
  1187,1188c1193
  < > cleanEx()
  < > nameEx("waste")
  ---
  > > cleanEx(); nameEx("waste")
  OK
• checking tests ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK