- using R version 2.14.2 RC (2012-02-23 r58468)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘mixOmics/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘mixOmics’ version ‘3.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘mixOmics’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
image.estim.regul: warning in axis(4, at = midpoints, label =
round(midpoints, 3)): partial argument match of 'label' to 'labels'
image.estim.regul: warning in axis(4, at = midpoints[binwidth], label =
round(midpoints[binwidth], 3)): partial argument match of 'label' to
'labels'
jet.colors: warning in rgb(ramp(seq(0, 1, length = n)), max = 255):
partial argument match of 'max' to 'maxColorValue'
plot3dIndiv.ipca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.ipca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.pca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.pca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.pls: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.pls: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.plsda: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.plsda: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.rcc: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.rcc: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.sipca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.sipca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.spca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.spca: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.spls: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.spls: warning in text3d(x, y, z, text = ind.names, color =
col, font = font, cex = cex[1]): partial argument match of 'text' to
'texts'
plot3dIndiv.splsda: warning in text3d(x, y, z, text = ind.names, color
= col, font = font, cex = cex): partial argument match of 'text' to
'texts'
plot3dIndiv.splsda: warning in text3d(x, y, z, text = ind.names, color
= col, font = font, cex = cex[1]): partial argument match of 'text'
to 'texts'
plot3dVar.ipca: warning in text3d(cord.X[, 1], cord.X[, 2], cord.X[,
3], text = var.label, color = col, font = font, cex = cex): partial
argument match of 'text' to 'texts'
plot3dVar.ipca: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.ipca: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.ipca: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pca: warning in text3d(cord.X[, 1], cord.X[, 2], cord.X[, 3],
text = var.label, color = col, font = font, cex = cex): partial
argument match of 'text' to 'texts'
plot3dVar.pca: warning in text3d(1.2, -0.05, 0, text = xlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pca: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pca: warning in text3d(0, -0.05, 1.2, text = zlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pls: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = X.label, color = col[[1]], font = font[1],
cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.pls: warning in text3d(cord.Y[, 1] + 0.05, cord.Y[, 2],
cord.Y[, 3] + 0.05, text = Y.label, color = col[[2]], font = font[2],
cex = cex[2]): partial argument match of 'text' to 'texts'
plot3dVar.pls: warning in text3d(1.2, -0.05, 0, text = xlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pls: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.pls: warning in text3d(0, -0.05, 1.2, text = zlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.plsda: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = var.label, color = col[[1]], font =
font[1], cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.plsda: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.plsda: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.plsda: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.rcc: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = X.label, color = col[[1]], font = font[1],
cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.rcc: warning in text3d(cord.Y[, 1] + 0.05, cord.Y[, 2],
cord.Y[, 3] + 0.05, text = Y.label, color = col[[2]], font = font[2],
cex = cex[2]): partial argument match of 'text' to 'texts'
plot3dVar.rcc: warning in text3d(1.2, -0.05, 0, text = xlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.rcc: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.rcc: warning in text3d(0, -0.05, 1.2, text = zlab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.sipca: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = var.label, color = col[[1]], font =
font[1], cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.sipca: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.sipca: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.sipca: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spca: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = var.label, color = col[[1]], font =
font[1], cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.spca: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spca: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spca: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spls: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = X.label, color = col[[1]], font = font[1],
cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.spls: warning in text3d(cord.Y[, 1] + 0.05, cord.Y[, 2],
cord.Y[, 3] + 0.05, text = Y.label, color = col[[2]], font = font[2],
cex = cex[2]): partial argument match of 'text' to 'texts'
plot3dVar.spls: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spls: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.spls: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.splsda: warning in text3d(cord.X[, 1] + 0.05, cord.X[, 2],
cord.X[, 3] + 0.05, text = var.label, color = col[[1]], font =
font[1], cex = cex[1]): partial argument match of 'text' to 'texts'
plot3dVar.splsda: warning in text3d(1.2, -0.05, 0, text = xlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.splsda: warning in text3d(0, 1.27, 0, text = ylab, cex = 0.8,
color = "black"): partial argument match of 'text' to 'texts'
plot3dVar.splsda: warning in text3d(0, -0.05, 1.2, text = zlab, cex =
0.8, color = "black"): partial argument match of 'text' to 'texts'
s.match : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = lty, col = col): partial argument match of 'len' to
'length'
s.match : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = lty, col = col): partial argument match of 'ang' to
'angle'
scatterutil.legend.bw.square: warning in round(br0, dig = 6): partial
argument match of 'dig' to 'digits'
scatterutil.legend.bw.square: warning in symbols(x0, y0, squares = z0,
bg = "black", fg = "white", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.bw.square: warning in symbols(x0, y0, squares = z0,
bg = "white", fg = "black", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.square.grey: warning in round(br0, dig = 6): partial
argument match of 'dig' to 'digits'
scatterutil.legend.square.grey: warning in symbols(x0, y0, squares = h,
bg = gray(valgris[i - 1]), add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.square.grey: warning in round(cha, dig = 3): partial
argument match of 'dig' to 'digits'
scatterutil.legendgris: warning in signif(qq, dig = 2): partial
argument match of 'dig' to 'digits'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... OK
- checking PDF version of manual ... OK