• using R version 2.7.1 Patched (2008-07-01 r46019)
  • using session charset: UTF-8
  • checking for file 'lodplot/DESCRIPTION' ... OK
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  • checking extension type ... Package
  • this is package 'lodplot' version '1.1'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'lodplot' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    chromosome.viewlinkage: no visible binding for global variable
    ‘chrom.bands’
    chromosome.viewsequence: no visible binding for global variable
    ‘chrom.bands’
    paint.chromosome: no visible binding for global variable ‘chrom.bands’
  • checking Rd files ... OK
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  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'plot.scan':
    plot.scan

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking data for non-ASCII characters ... OK
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  • creating lodplot-Ex.R ... OK
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  • checking examples ... OK
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  • creating lodplot-manual.tex ... OK
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  • checking lodplot-manual.tex using pdflatex ... OK
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