* installing to library ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages’ * installing *source* package ‘igraph’ ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for fmemopen... yes checking for open_memstream... yes checking for rintf... yes checking for finite... yes checking for expm1... yes checking for rint... yes checking for log2... yes checking for logbl... yes checking for snprintf... yes checking for log1p... yes checking for round... yes checking for fmin... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking for xml2-config... /usr/bin/xml2-config checking for xmlSAXUserParseFile in -lxml2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for __gmpz_add in -lgmp... yes checking gmp.h usability... yes checking gmp.h presence... yes checking for gmp.h... yes configure: creating ./config.status config.status: creating R/config.R config.status: creating src/Makevars config.status: creating src/config.h ** libs g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c DensityGrid.cpp -o DensityGrid.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c DensityGrid_3d.cpp -o DensityGrid_3d.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c NetDataTypes.cpp -o NetDataTypes.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c NetRoutines.cpp -o NetRoutines.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c adjlist.c -o adjlist.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c arpack.c -o arpack.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c array.c -o array.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c atlas.c -o atlas.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c attributes.c -o attributes.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c basic_query.c -o basic_query.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c bfgs.c -o bfgs.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c bipartite.c -o bipartite.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss.cc -o bliss.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_eqrefhash.cc -o bliss_eqrefhash.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_graph.cc -o bliss_graph.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_heap.cc -o bliss_heap.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_orbit.cc -o bliss_orbit.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_partition.cc -o bliss_partition.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_timer.cc -o bliss_timer.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c bliss_utils.cc -o bliss_utils.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c cattributes.c -o cattributes.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c centrality.c -o centrality.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c cliques.c -o cliques.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c clustertool.cpp -o clustertool.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c cocitation.c -o cocitation.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c community.c -o community.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c components.c -o components.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c conversion.c -o conversion.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c cores.c -o cores.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c d_lg10.c -o d_lg10.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c d_sign.c -o d_sign.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dasum.c -o dasum.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c daxpy.c -o daxpy.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dcopy.c -o dcopy.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c ddot.c -o ddot.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dgemv.c -o dgemv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dgeqr2.c -o dgeqr2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dger.c -o dger.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dgetv0.c -o dgetv0.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlabad.c -o dlabad.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlacon.c -o dlacon.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlacpy.c -o dlacpy.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dladiv.c -o dladiv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlae2.c -o dlae2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaev2.c -o dlaev2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaexc.c -o dlaexc.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlahqr.c -o dlahqr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaln2.c -o dlaln2.o gcc -std=gnu99 -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -ffloat-store -c dlamch.c gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlange.c -o dlange.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlanhs.c -o dlanhs.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlanst.c -o dlanst.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlanv2.c -o dlanv2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlapy2.c -o dlapy2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaqrb.c -o dlaqrb.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlarf.c -o dlarf.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlarfg.c -o dlarfg.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlarfx.c -o dlarfx.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlarnv.c -o dlarnv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlartg.c -o dlartg.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaruv.c -o dlaruv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlascl.c -o dlascl.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlaset.c -o dlaset.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlasr.c -o dlasr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlasrt.c -o dlasrt.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlassq.c -o dlassq.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dlasy2.c -o dlasy2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dmout.c -o dmout.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnaitr.c -o dnaitr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnapps.c -o dnapps.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnaup2.c -o dnaup2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnaupd.c -o dnaupd.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnconv.c -o dnconv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dneigh.c -o dneigh.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dneupd.c -o dneupd.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dngets.c -o dngets.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dnrm2.c -o dnrm2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dorm2r.c -o dorm2r.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dqueue.c -o dqueue.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c drl_graph.cpp -o drl_graph.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c drl_graph_3d.cpp -o drl_graph_3d.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c drl_layout.cpp -o drl_layout.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c drl_layout_3d.cpp -o drl_layout_3d.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c drl_parse.cpp -o drl_parse.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c drot.c -o drot.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsaitr.c -o dsaitr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsapps.c -o dsapps.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsaup2.c -o dsaup2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsaupd.c -o dsaupd.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dscal.c -o dscal.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsconv.c -o dsconv.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dseigt.c -o dseigt.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsesrt.c -o dsesrt.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dseupd.c -o dseupd.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsgets.c -o dsgets.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsortc.c -o dsortc.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsortr.c -o dsortr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dstatn.c -o dstatn.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dstats.c -o dstats.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dsteqr.c -o dsteqr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dstqrb.c -o dstqrb.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dswap.c -o dswap.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dtrevc.c -o dtrevc.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dtrexc.c -o dtrexc.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dtrmm.c -o dtrmm.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dtrsen.c -o dtrsen.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dtrsyl.c -o dtrsyl.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c dvout.c -o dvout.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c error.c -o error.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c etime_.c -o etime_.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c evolver_cit.c -o evolver_cit.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c fast_community.c -o fast_community.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c flow.c -o flow.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-gml-lexer.c -o foreign-gml-lexer.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-gml-parser.c -o foreign-gml-parser.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-graphml.c -o foreign-graphml.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-lgl-lexer.c -o foreign-lgl-lexer.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-lgl-parser.c -o foreign-lgl-parser.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-ncol-lexer.c -o foreign-ncol-lexer.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-ncol-parser.c -o foreign-ncol-parser.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-pajek-lexer.c -o foreign-pajek-lexer.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign-pajek-parser.c -o foreign-pajek-parser.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c foreign.c -o foreign.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c forestfire.c -o forestfire.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c games.c -o games.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_box_list.cpp -o gengraph_box_list.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_degree_sequence.cpp -o gengraph_degree_sequence.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_graph_molloy_hash.cpp -o gengraph_graph_molloy_hash.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_graph_molloy_optimized.cpp -o gengraph_graph_molloy_optimized.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_mr-connected.cpp -o gengraph_mr-connected.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_powerlaw.cpp -o gengraph_powerlaw.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c gengraph_random.cpp -o gengraph_random.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c gml_tree.c -o gml_tree.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c heap.c -o heap.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c i_dnnt.c -o i_dnnt.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c idamax.c -o idamax.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_buckets.c -o igraph_buckets.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_grid.c -o igraph_grid.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_hashtable.c -o igraph_hashtable.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_heap.c -o igraph_heap.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_psumtree.c -o igraph_psumtree.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_set.c -o igraph_set.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_stack.c -o igraph_stack.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_strvector.c -o igraph_strvector.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c igraph_trie.c -o igraph_trie.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c interrupt.c -o interrupt.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c iterators.c -o iterators.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c ivout.c -o ivout.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c layout.c -o layout.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c lsame.c -o lsame.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c math.c -o math.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c matrix.c -o matrix.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c measure_dynamics.c -o measure_dynamics.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c memory.c -o memory.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c motifs.c -o motifs.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c operators.c -o operators.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c other.c -o other.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c pottsmodel_2.cpp -o pottsmodel_2.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c pow_dd.c -o pow_dd.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c pow_di.c -o pow_di.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c progress.c -o progress.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c random.c -o random.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c revolver_cit.c -o revolver_cit.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c revolver_grow.c -o revolver_grow.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c revolver_ml_cit.c -o revolver_ml_cit.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c rinterface.c -o rinterface.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c s_cmp.c -o s_cmp.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c s_copy.c -o s_copy.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c second.c -o second.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c spectral_properties.c -o spectral_properties.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c spmatrix.c -o spmatrix.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c structural_properties.c -o structural_properties.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c structure_generators.c -o structure_generators.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c topology.c -o topology.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c type_indexededgelist.c -o type_indexededgelist.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c vector.c -o vector.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c vector_ptr.c -o vector_ptr.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c visitors.c -o visitors.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c walktrap.cpp -o walktrap.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c walktrap_communities.cpp -o walktrap_communities.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c walktrap_graph.cpp -o walktrap_graph.o g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -fpic -g -O2 -c walktrap_heap.cpp -o walktrap_heap.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c xerbla.c -o xerbla.o gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I/usr/local/include -DUSING_R -I. -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DPACKAGE_VERSION=\"0.5.2\" -DINTERNAL_ARPACK -DINTERNAL_LAPACK -DINTERNAL_BLAS -fpic -g -O2 -c zeroin.c -o zeroin.o g++ -shared -L/usr/local/lib -o igraph.so DensityGrid.o DensityGrid_3d.o NetDataTypes.o NetRoutines.o adjlist.o arpack.o array.o atlas.o attributes.o basic_query.o bfgs.o bipartite.o bliss.o bliss_eqrefhash.o bliss_graph.o bliss_heap.o bliss_orbit.o bliss_partition.o bliss_timer.o bliss_utils.o cattributes.o centrality.o cliques.o clustertool.o cocitation.o community.o components.o conversion.o cores.o d_lg10.o d_sign.o dasum.o daxpy.o dcopy.o ddot.o dgemv.o dgeqr2.o dger.o dgetv0.o dlabad.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaev2.o dlaexc.o dlahqr.o dlaln2.o dlamch.o dlange.o dlanhs.o dlanst.o dlanv2.o dlapy2.o dlaqrb.o dlarf.o dlarfg.o dlarfx.o dlarnv.o dlartg.o dlaruv.o dlascl.o dlaset.o dlasr.o dlasrt.o dlassq.o dlasy2.o dmout.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dneupd.o dngets.o dnrm2.o dorm2r.o dqueue.o drl_graph.o drl_graph_3d.o drl_layout.o drl_layout_3d.o drl_parse.o drot.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dscal.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dsteqr.o dstqrb.o dswap.o dtrevc.o dtrexc.o dtrmm.o dtrsen.o dtrsyl.o dvout.o error.o etime_.o evolver_cit.o fast_community.o flow.o foreign-gml-lexer.o foreign-gml-parser.o foreign-graphml.o foreign-lgl-lexer.o foreign-lgl-parser.o foreign-ncol-lexer.o foreign-ncol-parser.o foreign-pajek-lexer.o foreign-pajek-parser.o foreign.o forestfire.o games.o gengraph_box_list.o gengraph_degree_sequence.o gengraph_graph_molloy_hash.o gengraph_graph_molloy_optimized.o gengraph_mr-connected.o gengraph_powerlaw.o gengraph_random.o gml_tree.o heap.o i_dnnt.o idamax.o igraph_buckets.o igraph_grid.o igraph_hashtable.o igraph_heap.o igraph_psumtree.o igraph_set.o igraph_stack.o igraph_strvector.o igraph_trie.o interrupt.o iterators.o ivout.o layout.o lsame.o math.o matrix.o measure_dynamics.o memory.o motifs.o operators.o other.o pottsmodel_2.o pow_dd.o pow_di.o progress.o random.o revolver_cit.o revolver_grow.o revolver_ml_cit.o rinterface.o s_cmp.o s_copy.o second.o spectral_properties.o spmatrix.o structural_properties.o structure_generators.o topology.o type_indexededgelist.o vector.o vector_ptr.o visitors.o walktrap.o walktrap_communities.o walktrap_graph.o walktrap_heap.o xerbla.o zeroin.o -lxml2 -lgmp -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lR ** R ** inst ** preparing package for lazy loading ** help Warning: ./man/aaa-igraph-package.Rd:75: unknown macro '\layout' Warning: ./man/read.graph.Rd:210: unknown macro '\a' Warning: ./man/read.graph.Rd:243: unknown macro '\a' *** installing help indices ** building package indices ... * DONE (igraph)