• using R version 2.14.1 Patched (2012-02-05 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘hddplot/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hddplot’ version ‘0.54’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘hddplot’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘hddplot/R/zzz.R’:
  .First.lib calls:
  cat("\nPrior to version 0.53, an error in simulateScores() had", "\nthe effect that a random set of features was selected.\n")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  accTrainTest: no visible binding for global variable ‘Golub.BM’
  accTrainTest: no visible binding for global variable ‘cancer.BM’
  accTrainTest: no visible binding for global variable ‘gp.id’
  aovFbyrow: no visible binding for global variable ‘Golub’
  aovFbyrow: no visible binding for global variable ‘golub.info’
  cvdisc: no visible binding for global variable ‘GolubB’
  cvdisc: no visible binding for global variable ‘tissue.mfB’
  cvscores: no visible binding for global variable ‘BMonly.cv’
  cvscores: no visible binding for global variable ‘Golub.PBf’
  defectiveCVdisc: no visible binding for global variable ‘GolubB’
  defectiveCVdisc: no visible binding for global variable ‘tissue.mfB’
  plotTrainTest: no visible binding for global variable ‘Golub.BM’
  plotTrainTest: no visible binding for global variable ‘cancer.BM’
  scoreplot: no visible binding for global variable ‘miniG.scores’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  Golub.rda 1.9Mb 1.5Mb xz
• checking examples ... OK
• checking PDF version of manual ... OK