• using R version 2.10.0 Patched (2009-11-05 r50317)
• using session charset: UTF-8
• checking for file 'gclus/DESCRIPTION' ... OK
• this is package 'gclus' version '1.2'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'gclus' can be installed ... WARNING
  Found the following significant warnings:
  Warning: ./man/body.Rd:69: unexpected UNKNOWN '\reference'
  Warning: ./man/body.Rd:70: All text must be in a section
  Warning: ./man/body.Rd:71: All text must be in a section
  Warning: ./man/body.Rd:72: All text must be in a section
  Warning: ./man/body.Rd:73: All text must be in a section
  Warning: ./man/hclust.Rd:83: unexpected '}'
  Warning: bad markup (extra space?) at utilities.Rd:43:10
  Warning: ./man/wine.Rd:39: unexpected UNKNOWN '\reference'
  Warning: ./man/wine.Rd:46: unexpected macro '\url'
  Warning: ./man/wine.Rd:40: All text must be in a section
  Warning: ./man/wine.Rd:41: All text must be in a section
  Warning: ./man/wine.Rd:41: All text must be in a section
  Warning: ./man/wine.Rd:42: All text must be in a section
  Warning: ./man/wine.Rd:44: All text must be in a section
  Warning: ./man/wine.Rd:45: All text must be in a section
  Warning: ./man/wine.Rd:46: All text must be in a section
  Warning: ./man/wine.Rd:46: All text must be in a section
  See http://www.r-project.org/nosvn/R.check/r-patched-linux-ix86/gclus-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... NOTE
  Non-standard license specification:
  GPL version 2 or later
  Standardizable: TRUE
  Standardized license specification:
  GPL (>= 2)
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... WARNING
  'library' or 'require' calls not declared from:
  cluster
  See the information on DESCRIPTION files in the chapter 'Creating R
  packages' of the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  ac: no visible global function definition for ‘agnes’
  sil: no visible global function definition for ‘silhouette’
• checking Rd files ... WARNING
  prepare_Rd: body.Rd:69: unexpected UNKNOWN '\reference'
  prepare_Rd: body.Rd:70: All text must be in a section
  prepare_Rd: body.Rd:71: All text must be in a section
  prepare_Rd: body.Rd:72: All text must be in a section
  prepare_Rd: body.Rd:73: All text must be in a section
  prepare_Rd: hclust.Rd:83: unexpected '}'
  prepare_Rd: bad markup (extra space?) at utilities.Rd:43:10
  prepare_Rd: wine.Rd:39: unexpected UNKNOWN '\reference'
  prepare_Rd: wine.Rd:46: unexpected macro '\url'
  prepare_Rd: wine.Rd:40: All text must be in a section
  prepare_Rd: wine.Rd:41: All text must be in a section
  prepare_Rd: wine.Rd:42: All text must be in a section
  prepare_Rd: wine.Rd:44: All text must be in a section
  prepare_Rd: wine.Rd:45: All text must be in a section
  prepare_Rd: wine.Rd:46: All text must be in a section
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'reorder.hclust':
  reorder.hclust
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK