• using R version 2.14.1 Patched (2012-02-04 r58267)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘fpc/DESCRIPTION’ ... OK
• this is package ‘fpc’ version ‘2.0-3’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘fpc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘fpc/R/fpc.R’:
  .First.lib calls:
  require(cluster)
  require(MASS)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
  dip.pvalue: no visible binding for global variable ‘qDiptab’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking differences from ‘fpc-Ex.Rout’ to ‘fpc-Ex.Rout.save’ ...
  1a2
  >
  6d6
  <
  139,141c139,141
  < [1,] 1.0000000 9.987508e-01 1.00000e+00
  < [2,] 0.9987508 1.000000e+00 1.78102e-11
  < [3,] 1.0000000 1.781020e-11 1.00000e+00
  ---
  > [1,] 1.0000000 9.987508e-01 1.000000e+00
  > [2,] 0.9987508 1.000000e+00 1.781020e-11
  > [3,] 1.0000000 1.781020e-11 1.000000e+00
  322c322
  < [1] 13.7291
  ---
  > [1] 13.72910
  751c751
  < 0.193
  ---
  > 0.686
  754c754
  < 0.184
  ---
  > 0.412
  758c758
  < 0.335
  ---
  > 0.736
  896,898c896,898
  < [1,] 0.84359426 1.14608710 -0.02209846
  < [2,] -0.33649001 0.27903245 -0.01187219
  < [3,] -0.06808816 0.03965075 1.00303099
  ---
  > [1,] 0.84359426 1.14608710 0.02209846
  > [2,] -0.33649001 0.27903245 0.01187219
  > [3,] -0.06808816 0.03965075 -1.00303099
  901,903c901,903
  < [1,] -0.07433352 -1.420772600 0.039179197
  < [2,] -0.43725296 -0.002745807 -0.005281343
  < [3,] -0.03831248 -0.001676168 -1.005389819
  ---
  > [1,] -0.07433352 1.420772600 0.039179197
  > [2,] -0.43725296 0.002745807 -0.005281343
  > [3,] -0.03831248 0.001676168 -1.005389819
  906,908c906,908
  < [1,] -1.29527821 0.50007753 -0.33960121
  < [2,] 0.65331636 0.05164296 -0.08010673
  < [3,] -0.08051801 -0.66005066 -0.46509088
  ---
  > [1,] -1.2952782 0.50007753 -0.33960121
  > [2,] 0.6533164 0.05164296 -0.08010673
  > [3,] -0.0805180 -0.66005066 -0.46509088
  1058,1061c1058,1061
  < Sepal.Length 0.3685213 0.9175803 -0.0161054 0.1482532
  < Sepal.Width -0.4237402 0.3056933 0.2672553 -0.8096731
  < Petal.Length -0.7834017 0.2490473 -0.4429863 0.3577993
  < Petal.Width -0.2663044 0.0507288 0.8556158 0.4409424
  ---
  > Sepal.Length 0.3685213 0.9175803 -0.01610540 0.1482532
  > Sepal.Width -0.4237402 0.3056933 0.26725530 -0.8096731
  > Petal.Length -0.7834017 0.2490473 -0.44298628 0.3577993
  > Petal.Width -0.2663044 0.0507288 0.85561579 0.4409424
  1266c1266
  < Constant ca= 10.0701
  ---
  > Constant ca= 10.07010
  1274c1274
  < Ratio to estimated expectation: 1.5872
  ---
  > Ratio to estimated expectation: 1.587200
  1283c1283
  < Ratio to estimated expectation: 2.08242
  ---
  > Ratio to estimated expectation: 2.082420
  1355c1355
  < Nonoptimal or repeated fit found in run 2
  ---
  > k= 2 new best fit found in run 2
  1359c1359
  < k= 3 BIC= 1292.826
  ---
  > k= 3 BIC= 1300.073
  1370,1371c1370,1371
  < Comp.1 0.506 48 100 0.48
  < Comp.2 0.494 52 100 0.52
  ---
  > Comp.1 0.527 51 100 0.51
  > Comp.2 0.473 49 100 0.49
  1378,1379c1378,1379
  < [38] 2 2 1 2 1 1 2 2 1 1 2 2 2 1 2 1 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 2 1 2 2 1
  < [75] 1 1 1 2 2 1 2 1 1 1 1 2 2 1 2 1 1 2 1 2 2 2 2 2 2 2
  ---
  > [38] 2 2 1 2 1 1 2 2 1 1 2 1 2 1 2 1 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 1 2 2 1
  > [75] 1 1 1 2 2 1 2 1 1 1 1 2 1 1 2 1 1 2 1 2 2 2 2 2 2 2
  1384c1384
  < [1] -0.06786994 -0.54104769
  ---
  > [1] -0.06364726 -0.51088660
  1388,1389c1388,1389
  < [1,] 1.13052 0.000000
  < [2,] 0.00000 1.091476
  ---
  > [1,] 1.122126 0.000000
  > [2,] 0.000000 1.096735
  1393c1393
  < [1] 0.27877309 0.22952064 0.14780796 0.30344389 0.04045442
  ---
  > [1] 0.27279622 0.22617675 0.15713052 0.29791908 0.04597742
  1396c1396
  < [1] 0.1441872 0.1676908 0.5133395 0.1747825
  ---
  > [1] 0.1490151 0.1719611 0.5061025 0.1729213
  1404c1404
  < [1] 0.2365028 0.4120134
  ---
  > [1] 0.2462103 0.4234742
  1408,1409c1408,1409
  < [1,] 0.6873457 0.0000000
  < [2,] 0.0000000 0.8517165
  ---
  > [1,] 0.6738187 0.0000000
  > [2,] 0.0000000 0.8547246
  1413c1413
  < [1] 0.09927107 0.16982896 0.27356225 0.05383639 0.40350133
  ---
  > [1] 0.09744369 0.17073751 0.26910177 0.04818053 0.41453650
  1416c1416
  < [1] 0.27726281 0.41500389 0.06173992 0.24599338
  ---
  > [1] 0.2781738 0.4219535 0.0484232 0.2514495
  1493,1499d1492
  <
  < Attaching package: 'prabclus'
  <
  < The following object(s) are masked from 'package:fpc':
  <
  < con.comp
  <
  1529,1530c1522,1523
  < [1,] -0.4301944 0.1259479 -0.1113803 -0.1112671 0.103153 -0.129418 -0.1113858
  < [2,] 3.2115590 6.8582670 5.3351123 5.3353299 6.953000 7.402776 5.3351018
  ---
  > [1,] -0.4301944 0.1259479 -0.1113803 -0.1112671 0.1031530 -0.1294180 -0.1113858
  > [2,] 3.2115590 6.8582670 5.3351123 5.3353299 6.9529995 7.4027761 5.3351018
  1665,1670c1658,1663
  < [,1] [,2] [,3] [,4] [,5] [,6] [,7]
  < [1,] 0.3593477 0.3641063 -0.1113878 0.4429484 0.103153 -0.129418 -0.1113858
  < [2,] 12.4801629 12.5943626 5.3350959 13.7169107 6.953000 7.402776 5.3351018
  < [,8] [,9] [,10]
  < [1,] -0.1115167 2.056731 -1.531638
  < [2,] 5.3348502 17.205746 17.205554
  ---
  > [,1] [,2] [,3] [,4] [,5] [,6]
  > [1,] 0.3593477 0.3641063 -0.1113878 0.4429484 0.1031530 -0.1294180
  > [2,] 12.4801629 12.5943626 5.3350959 13.7169107 6.9529995 7.4027761
  > [,7] [,8] [,9] [,10]
  > [1,] -0.1113858 -0.1115167 2.056731 -1.531638
  > [2,] 5.3351018 5.3348502 17.205746 17.205554
  1676,1677c1669,1670
  < [1,] 3.520894 1.18919
  < [2,] 1.189190 67.08240
  ---
  > [1,] 3.520894 1.189190
  > [2,] 1.189190 67.082397
  2276,2279c2269,2272
  < [1,] 0.069320616 0.0518644883 0.0046873868 0.0095366850
  < [2,] 0.051864488 0.0431650668 0.0004939104 0.0007935271
  < [3,] 0.004687387 0.0004939104 0.0032572771 0.0062259484
  < [4,] 0.009536685 0.0007935271 0.0062259484 0.0124828618
  ---
  > [1,] 0.069320616 0.0518644883 0.0046873868 0.009536685
  > [2,] 0.051864488 0.0431650668 0.0004939104 0.000793527
  > [3,] 0.004687387 0.0004939104 0.0032572771 0.006225948
  > [4,] 0.009536685 0.0007935271 0.0062259484 0.012482862
  2316,2335c2309,2328
  < 122 1.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 42 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 45 7.431477e-78 7.431477e-78 1.0000000 0.00000e+00 0 0.000000e+00
  < 86 1.000000e+00 0.000000e+00 0.0000000 7.61652e-267 0 0.000000e+00
  < 70 1.074570e-19 0.000000e+00 0.0000000 1.00000e+00 0 0.000000e+00
  < 137 4.300906e-134 0.000000e+00 0.0000000 0.00000e+00 1 0.000000e+00
  < 37 9.430013e-103 9.430013e-103 1.0000000 0.00000e+00 0 0.000000e+00
  < 46 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 134 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 88 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 1.000000e+00
  < 72 2.877478e-90 0.000000e+00 0.0000000 1.00000e+00 0 0.000000e+00
  < 123 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 1 8.836887e-28 8.836887e-28 1.0000000 0.00000e+00 0 0.000000e+00
  < 147 1.424320e-288 0.000000e+00 0.0000000 0.00000e+00 0 1.000000e+00
  < 51 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 120 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 9.998512e-01
  < 9 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00
  < 18 3.526927e-03 3.526927e-03 0.9964731 0.00000e+00 0 0.000000e+00
  < 28 8.360527e-61 8.360527e-61 1.0000000 0.00000e+00 0 0.000000e+00
  < 54 2.602855e-34 0.000000e+00 0.0000000 1.00000e+00 0 1.825211e-292
  ---
  > 122 1.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 42 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 45 7.431477e-78 7.431477e-78 1.000000 0.00000e+00 0 0.000000e+00
  > 86 1.000000e+00 0.000000e+00 0.000000 7.61652e-267 0 0.000000e+00
  > 70 1.074570e-19 0.000000e+00 0.000000 1.00000e+00 0 0.000000e+00
  > 137 4.300906e-134 0.000000e+00 0.000000 0.00000e+00 1 0.000000e+00
  > 37 9.430013e-103 9.430013e-103 1.000000 0.00000e+00 0 0.000000e+00
  > 46 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 134 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 88 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 1.000000e+00
  > 72 2.877478e-90 0.000000e+00 0.000000 1.00000e+00 0 0.000000e+00
  > 123 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 1 8.836887e-28 8.836887e-28 1.000000 0.00000e+00 0 0.000000e+00
  > 147 1.424320e-288 0.000000e+00 0.000000 0.00000e+00 0 1.000000e+00
  > 51 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 120 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 9.998512e-01
  > 9 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00
  > 18 3.526927e-03 3.526927e-03 0.996473 0.00000e+00 0 0.000000e+00
  > 28 8.360527e-61 8.360527e-61 1.000000 0.00000e+00 0 0.000000e+00
  > 54 2.602855e-34 0.000000e+00 0.000000 1.00000e+00 0 1.825211e-292
  2789,2795d2781
  <
  < Attaching package: 'prabclus'
  <
  < The following object(s) are masked from 'package:fpc':
  <
  < con.comp
  <
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘fpctests.R’
  Comparing ‘fpctests.Rout’ to ‘fpctests.Rout.save’ ...5a6
  >
  10d10
  <
  23,25c23,25
  < [1,] -1.39122951 -0.30933547 0.10928950
  < [2,] 0.62109134 -0.22334223 0.01643619
  < [3,] -0.03130796 0.07485511 -0.80738843
  ---
  > [1,] -1.39122951 -0.3093355 0.10928950
  > [2,] 0.62109134 -0.2233422 0.01643619
  > [3,] -0.03130796 0.0748551 -0.80738843
  28,30c28,30
  < [1,] 0.2153917 -0.33885087 -0.518856215
  < [2,] -0.3702908 0.01439633 -0.008930009
  < [3,] 0.1108281 0.79140767 -0.235742343
  ---
  > [1,] 0.2153917 -0.33885087 -0.51885622
  > [2,] -0.3702908 0.01439633 -0.00893001
  > [3,] 0.1108281 0.79140767 -0.23574234
  37c37
  < 4 clusters 833.1691
  ---
  > 4 clusters 833.169
  92,94c92,94
  < 12 13.9716414 13.677807 14.503586 13.94655 14.0084574 13.6015727 13.784232
  < 34 0.3227397 0.459568 0.841392 1.21862 0.4964457 0.1656088 2.670075
  < 50 14.6877989 15.036740 14.241074 15.09286 14.7181912 14.9490175 14.477326
  ---
  > 12 13.9716414 13.677807 14.503586 13.946552 14.0084574 13.6015727 13.784232
  > 34 0.3227397 0.459568 0.841392 1.218620 0.4964457 0.1656088 2.670075
  > 50 14.6877989 15.036740 14.241074 15.092859 14.7181912 14.9490175 14.477326
  592,598d591
  <
  < Attaching package: 'prabclus'
  <
  < The following object(s) are masked from 'package:fpc':
  <
  < con.comp
  <
  810,811c803,804
  < [1] 4 4 4 3 4 3 3 1 5 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2
  < [39] 2 2 2 1 1 1 1 1 5 5 5 5
  ---
  > [1] 1 1 1 4 1 4 4 3 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 2 2 2 2 2 2
  > [39] 2 2 2 3 3 3 3 3 5 5 5 5
  814,817c807,810
  < 4 0.6842995 1.2614578
  < 29 0.8974744 -1.0022315
  < 24 -0.7193505 0.1440717
  < 1 -0.4994704 -1.4250867
  ---
  > 2 -0.4994704 -1.4250867
  > 41 0.8974744 -1.0022315
  > 11 0.6842995 1.2614578
  > 15 -0.7193505 0.1440717
  828c821
  < [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE
  ---
  > [1] TRUE TRUE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  831c824
  < [37] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE FALSE FALSE
  ---
  > [37] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  842,845c835,838
  < [1] FALSE FALSE FALSE TRUE FALSE TRUE TRUE FALSE FALSE TRUE TRUE TRUE
  < [13] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  < [25] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE
  < [37] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  ---
  > [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE
  > [13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  > [25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  > [37] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE FALSE FALSE
  849,851c842,844
  < [1] TRUE TRUE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  < [13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  < [25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
  ---
  > [1] FALSE FALSE FALSE TRUE FALSE TRUE TRUE FALSE FALSE TRUE TRUE TRUE
  > [13] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  > [25] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE
  864,865c857,858
  < [1] 4 4 4 3 4 3 3 1 5 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2
  < [39] 2 2 2 1 1 1 1 1 5 5 5 5
  ---
  > [1] 1 1 1 4 1 4 4 3 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 2 2 2 2 2 2
  > [39] 2 2 2 3 3 3 3 3 5 5 5 5
  906c899
  < [1] 15.23
  ---
  > [1] 15.23000
  1028c1021
  < [1,] 8 0.13861386
  ---
  > [1,] 8 0.17821782
• checking PDF version of manual ... OK