- using R version 2.14.1 Patched (2012-02-05 r58287)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘ergm/DESCRIPTION’ ... OK
- this is package ‘ergm’ version ‘2.4-3’
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
- checking for executable files ... OK
- checking whether package ‘ergm’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘ergm/R/zzz.R’:
.First.lib calls:
cat("\nergm:", info[, "Title"], "\nVersion", info[, "Version"], "created on", info[, "Date"], "\n")
cat(paste("copyright (c) 2003, Mark S. Handcock, University of California-Los Angeles\n", " David R. Hunter, Penn State University\n", " Carter T. Butts, University of California-Irvine\n", " Steven M. Goodreau, University of Washington\n", " Pavel N. Krivitsky, Carnegie Mellon University\n", " Martina Morris, University of Washington\n", sep = ""))
cat("Type help(package=\"ergm\") to get started.\n\n")
cat("Based on \"statnet\" project software (http://statnetproject.org).\n", "For license and citation information see http://statnetproject.org/attribution\n", "or type citation(\"ergm\").\n")
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
ergm.getmodel: warning in exists(fname, env = formula.env, mode =
"function"): partial argument match of 'env' to 'envir'
ergm.getmodel: warning in exists(as.character(v[[i]][[1]]), env =
formula.env, mode = "function"): partial argument match of 'env' to
'envir'
ergm.raftery.diag: warning in tabulate(aaa, nbin = 9): partial argument
match of 'nbin' to 'nbins'
ergm.raftery.diag: warning in tabulate(aaa, nbin = 4): partial argument
match of 'nbin' to 'nbins'
ergm.t.summary: warning in pt(tstat, df, lower = FALSE): partial
argument match of 'lower' to 'lower.tail'
is.invertible: warning in eigen(V, sym = TRUE, only.values = TRUE):
partial argument match of 'sym' to 'symmetric'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages/ergm/libs/ergm.so’:
Found ‘exit’, possibly from ‘exit’ (C)
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running ‘constrain_observed.R’
Running ‘ergm.mixed.R’
Running ‘ergmMPLEtest.R’
Running ‘estflo.R’
Running ‘fix.curved.R’
Running ‘flomarkov.R’
Running ‘miss_tests.R’
Running ‘mple_largenetwork.R’
Running ‘mple_meanstats.R’
Running ‘nodemix.R’
Running ‘simpletests.R’
Running ‘steppingtest.R’
Running ‘termTests.bipartite.R’
Running ‘termTests.directed.R’
Running ‘termTests.flexible.R’
Running ‘termTests.undirected.R’
Running ‘testgflomiss.R’
Running ‘testgmonkmiss.R’
Running ‘update.formula.R’
- checking PDF version of manual ... OK