• using R version 2.14.2 RC (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘cherry/DESCRIPTION’ ... OK
• this is package ‘cherry’ version ‘0.1-5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘cherry’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  curveFisher: warning in rank(p, ties = "first"): partial argument match
  of 'ties' to 'ties.method'
  curveFisher: warning in qchisq(1 - alpha, df = 2 * 1:length(lpv), lower
  = T): partial argument match of 'lower' to 'lower.tail'
  curveSimes: warning in rank(p, ties = "first"): partial argument match
  of 'ties' to 'ties.method'
  pickFisher : <anonymous>: warning in qchisq(1 - alpha, df = 2 *
  (0:(length(cum.nr) - 1) + st), lower = TRUE): partial argument match
  of 'lower' to 'lower.tail'
  pickSimes: warning in rank(p, ties = "first"): partial argument match
  of 'ties' to 'ties.method'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK