• using R version 2.10.0 Patched (2009-11-22 r50534)
• using session charset: UTF-8
• checking for file 'caTools/DESCRIPTION' ... OK
• this is package 'caTools' version '1.10'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'caTools' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Package(s) unavailable to check Rd xrefs: ‘ROC’
  Unknown package(s) ‘gdDevices’, ‘boost’ in Rd xrefs
  Missing link(s) in documentation object './man/GIF.Rd':
  ‘[grDevices]{terrain.colors.colors}’
  
  Missing link(s) in documentation object './man/combs.Rd':
  ‘[vsn]{nchoosek}’
  
  Missing link(s) in documentation object './man/runmad.Rd':
  ‘[fSeries]{rollVar}’ ‘[fSeries]{rollFun}’ ‘[zoo]{rapply}’
  
  Missing link(s) in documentation object './man/runmean.Rd':
  ‘[fSeries]{rollMean}’ ‘[fSeries]{rollFun}’ ‘[zoo]{rapply}’
  
  Missing link(s) in documentation object './man/runminmax.Rd':
  ‘[fSeries]{rollMin}’ ‘[fSeries]{rollMax}’ ‘[fSeries]{rollFun}’
  ‘[zoo]{rapply}’
  
  Missing link(s) in documentation object './man/runquantile.Rd':
  ‘[fSeries]{rollMin}’ ‘[fSeries]{rollMax}’ ‘[fSeries]{rollFun}’
  ‘[zoo]{rapply}’
  
  Missing link(s) in documentation object './man/runsd.Rd':
  ‘[fSeries]{rollVar}’ ‘[fSeries]{rollFun}’ ‘[zoo]{rapply}’
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'predict.LogitBoost':
  predict.LogitBoost
  
  S3 methods shown with full name in documentation object 'sum.exact, cumsum.exact & runsum.exact':
  sum.exact cumsum.exact
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking PDF version of manual ... OK