* installing to library ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages’
* installing *source* package ‘bayesSurv’ ...
** libs
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c ARS2.cpp -o ARS2.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c GMRF.cpp -o GMRF.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c GMRF_Gspline.cpp -o GMRF_Gspline.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline.cpp -o Gspline.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_a.cpp -o Gspline_update_a.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c List.cpp -o List.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c MHblocks.cpp -o MHblocks.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c MHproposal.cpp -o MHproposal.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Mvtdist3.cpp -o Mvtdist3.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c Slice_sampler2.cpp -o Slice_sampler2.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c arms.cpp -o arms.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c arrays2Mat.cpp -o arrays2Mat.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayesBisurvreg.cpp -o bayesBisurvreg.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayesDensity.cpp -o bayesDensity.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayesGspline.cpp -o bayesGspline.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayesHistogram.cpp -o bayesHistogram.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayessurvreg1.cpp -o bayessurvreg1.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bayessurvreg2.cpp -o bayessurvreg2.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c bblocks.cpp -o bblocks.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c birthDeath.cpp -o birthDeath.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c checkImputeData.cpp -o checkImputeData.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c cholesky.cpp -o cholesky.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classBetaGamma.cpp -o classBetaGamma.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classCovMatrix.cpp -o classCovMatrix.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classRandomEff.cpp -o classRandomEff.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c covMatrix.cpp -o covMatrix.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c in_output.cpp -o in_output.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c in_output_GS.cpp -o in_output_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c logLikelihood.cpp -o logLikelihood.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c miscellaneous.cpp -o miscellaneous.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c miscellaneous_GS.cpp -o miscellaneous_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c mixMoments.cpp -o mixMoments.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c moodyRing.cpp -o moodyRing.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c mvtdist.cpp -o mvtdist.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c newton_raphson.cpp -o newton_raphson.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c openFile.cpp -o openFile.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c predictMisc.cpp -o predictMisc.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c predictive.cpp -o predictive.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c predictive_GS.cpp -o predictive_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c propVector.cpp -o propVector.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c qrdecomp.cpp -o qrdecomp.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c quantile.cpp -o quantile.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c random.cpp -o random.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c randomLogLikelihood.cpp -o randomLogLikelihood.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c regresResidual_GS.cpp -o regresResidual_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c rhoNorm.cpp -o rhoNorm.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c sampledKendallTau.cpp -o sampledKendallTau.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c splitCombine.cpp -o splitCombine.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c structRandomEff32.cpp -o structRandomEff32.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c templatefun.cpp -o templatefun.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c templatefun_GS.cpp -o templatefun_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateAlloc.cpp -o updateAlloc.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateCovMatRandom.cpp -o updateCovMatRandom.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateData.cpp -o updateData.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateEta.cpp -o updateEta.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateMeans.cpp -o updateMeans.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateRandom.cpp -o updateRandom.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateRegres.cpp -o updateRegres.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateVars.cpp -o updateVars.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c updateWeights.cpp -o updateWeights.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c update_Alloc_GS.cpp -o update_Alloc_GS.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c update_Data_GS.cpp -o update_Data_GS.o
g++ -shared -L/usr/local/lib -o bayesSurv.so AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lRlapack -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lRblas -lgfortran -lm -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Loading required package: lattice
** help
Warning: ./man/bayesBisurvreg.Rd:556: unknown macro '\lambda'
Warning: ./man/bayesHistogram.Rd:766: unknown macro '\lambda'
*** installing help indices
** building package indices ...
* DONE (bayesSurv)