Check results for 'aster'

using R version 2.14.1 Patched (2012-02-05 r58287)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘aster/DESCRIPTION’ ... OK
this is package ‘aster’ version ‘0.7-7’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘aster’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... NOTE

Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
chamae.rda 56Kb 32Kb xz
chamae2.rda 49Kb 31Kb xz
echin2.rda 24Kb 5Kb xz
sim.rda 189Kb 154Kb xz
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable compilation flags in Makevars ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... NOTE
File ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages/aster/libs/aster.so’:
Found ‘exit’, possibly from ‘exit’ (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checking for left-overs from vignette generation ... NOTE
file ‘inst/doc/Rplots.pdf’ will not be installed: please remove it
checking sizes of PDF files under ‘inst/doc’ ... OK
checking examples ... OK
checking for unstated dependencies in tests ... OK
checking tests ... OK
Running ‘aster.R’
Comparing ‘aster.Rout’ to ‘aster.Rout.save’ ...61c61
< [1] "Mean relative difference: 2.125573e-08"
---
> [1] "Mean relative difference: 2.127142e-08"
63c63
< [1] "Mean relative difference: 1.97014e-08"
---
> [1] "Mean relative difference: 1.970140e-08"
Running ‘chk.R’
Comparing ‘chk.Rout’ to ‘chk.Rout.save’ ... OK
Running ‘famber.R’
Comparing ‘famber.Rout’ to ‘famber.Rout.save’ ... OK
Running ‘famnegbin.R’
Comparing ‘famnegbin.Rout’ to ‘famnegbin.Rout.save’ ... OK
Running ‘famnorloc.R’
Comparing ‘famnorloc.Rout’ to ‘famnorloc.Rout.save’ ... OK
Running ‘famnzp.R’
Comparing ‘famnzp.Rout’ to ‘famnzp.Rout.save’ ... OK
Running ‘fampoi.R’
Comparing ‘fampoi.Rout’ to ‘fampoi.Rout.save’ ... OK
Running ‘famtnb.R’
Comparing ‘famtnb.Rout’ to ‘famtnb.Rout.save’ ... OK
Running ‘foobar.R’
Comparing ‘foobar.Rout’ to ‘foobar.Rout.save’ ... OK
Running ‘formula.R’
Comparing ‘formula.Rout’ to ‘formula.Rout.save’ ... OK
Running ‘gradmat.R’
Comparing ‘gradmat.Rout’ to ‘gradmat.Rout.save’ ...99c99
< varbl3 5.766e-16 7.319e-01 0.000 1.000
---
> varbl3 7.393e-16 7.319e-01 1.01e-15 1.000
Running ‘ktnb.R’
Comparing ‘ktnb.Rout’ to ‘ktnb.Rout.save’ ...48,59c48,59
< 3 4 5 6 7 8 9
< observed 707.0000 724.0000 799.0000 798.0000 742.0000 637.0000 597.0000
< expected 708.2678 756.5403 770.2821 758.6016 729.0392 687.6125 638.9911
< 10 11 12 13 14 15 16 17
< observed 547.0000 522.0000 443.0000 410.0000 382.0000 336.000 326.0000 301.000
< expected 586.7091 533.3719 480.8435 430.4065 382.8955 338.806 298.3818 261.684
< 18 19 20 21 22 23 24 25
< observed 235.0000 215.0000 183.0000 135.0000 140.0000 115.000 100.0000 95.0000
< expected 228.6446 199.1082 172.8635 149.6666 129.2586 111.378 95.7691 82.1881
< 26 27 28 29 30 31 32 33
< observed 73.00000 74.00000 51.00000 39.00000 36.0000 40.00000 36.00000 18.00000
< expected 70.40659 60.21367 51.41676 43.84172 37.3323 31.74924 26.96912 22.88316
---
> 3 4 5 6 7 8 9 10
> observed 707.0000 724.0000 799.000 798.0000 742.0000 637.0000 597.0000 547.0000
> expected 708.2678 756.5403 770.282 758.6016 729.0392 687.6125 638.9911 586.7091
> 11 12 13 14 15 16 17 18
> observed 522.0000 443.0000 410.0000 382.0000 336.000 326.0000 301.0000 235.0000
> expected 533.3719 480.8435 430.4065 382.8955 338.806 298.3818 261.6840 228.6446
> 19 20 21 22 23 24 25 26
> observed 215.0000 183.0000 135.0000 140.0000 115.000 100.0000 95.0000 73.00000
> expected 199.1082 172.8635 149.6666 129.2586 111.378 95.7691 82.1881 70.40659
> 27 28 29 30 31 32 33
> observed 74.00000 51.00000 39.00000 36.00000 40.00000 36.00000 18.00000
> expected 60.21367 51.41676 43.84172 37.33230 31.74924 26.96912 22.88316
61,62c61,62
< observed 28.00000 12.0000 18.00000 17.00000 13.000000 11.000000 45.00000
< expected 19.39585 16.4237 13.89395 11.74344 9.917429 8.368659 44.13479
---
> observed 28.00000 12.00000 18.00000 17.00000 13.00000 11.00000 45.00000
> expected 19.39585 16.42370 13.89395 11.74344 9.91743 8.36866 44.13479
94,95c94,95
< observed 137.0000 82.00000 40.00000 31.00000 12.0000 10.000000 7.00000
< expected 136.2532 80.15125 46.75631 27.08143 15.5894 8.925991 11.69563
---
> observed 137.0000 82.00000 40.00000 31.00000 12.00000 10.00000 7.00000
> expected 136.2532 80.15125 46.75631 27.08143 15.58940 8.92599 11.69563
105,110c105,110
< 3 4 5 6 7 8 9 10
< observed 4877.000 2621.000 1286.00 630.0000 329.0000 142.0000 69.00000 23.00000
< expected 4925.874 2591.642 1299.72 630.4796 298.4457 138.6486 63.46345 28.70178
< 11 12
< observed 11.00000 12.00000
< expected 12.85208 10.17242
---
> 3 4 5 6 7 8 9
> observed 4877.000 2621.000 1286.000 630.0000 329.0000 142.0000 69.00000
> expected 4925.874 2591.642 1299.720 630.4796 298.4457 138.6486 63.46345
> 10 11 12
> observed 23.00000 11.00000 12.00000
> expected 28.70178 12.85208 10.17242
133,134c133,134
< observed 9424.000 558.0000 18.00000
< expected 9439.299 530.7065 29.99429
---
> observed 9424.0 558.0000 18.00000
> expected 9439.3 530.7065 29.99429
191,192c191,192
< observed 244.0000 151.0000 141.0000 82.00000 49.0000 38.00000 23.0000 12.00000
< expected 226.7492 158.9475 110.4363 76.10968 52.0619 35.36725 23.8729 16.01878
---
> observed 244.0000 151.0000 141.0000 82.00000 49.0000 38.00000 23.00000 12.00000
> expected 226.7492 158.9475 110.4363 76.10968 52.0619 35.36725 23.87290 16.01878
Running ‘ktp.R’
Comparing ‘ktp.Rout’ to ‘ktp.Rout.save’ ...64,65c64,65
< observed 3208.000 2715.000 1933.00 1127.000 578.0000 296.000 96.00000 32.0000
< expected 3177.274 2780.115 1946.08 1135.214 567.6068 248.328 96.57199 33.8002
---
> observed 3208.000 2715.000 1933.000 1127.000 578.0000 296.000 96.000 32.0000
> expected 3177.274 2780.115 1946.080 1135.214 567.6068 248.328 96.572 33.8002
67,68c67,68
< observed 15.0000
< expected 15.0098
---
> observed 15.00000
> expected 15.00980
146c146
< chi squared statistic = 8.997171
---
> chi squared statistic = 8.99717
203c203
< [1] -14.1133
---
> [1] -14.11330
217c217
< [1] 14.1133
---
> [1] 14.11330
219c219
< [1] 2.131628e-14
---
> [1] 1.776357e-14
Running ‘matops.R’
Comparing ‘matops.Rout’ to ‘matops.Rout.save’ ... OK
Running ‘mlogl-cond.R’
Comparing ‘mlogl-cond.Rout’ to ‘mlogl-cond.Rout.save’ ...141,142c141,142
< [1] -1.704298e-05 5.650287e-06 4.206920e-05 1.844437e-06 1.731152e-05
< [6] -2.905022e-05
---
> [1] -1.704300e-05 5.650298e-06 4.206926e-05 1.844440e-06 1.731154e-05
> [6] -2.904922e-05
Running ‘mlogl-unco.R’
Comparing ‘mlogl-unco.Rout’ to ‘mlogl-unco.Rout.save’ ...47c47
< [1] 123.968
---
> [1] 123.9680
167c167
< [1] TRUE
---
> [1] "Component 2: Mean relative difference: 3.221245e-08"
217c217
< [1] 1.62499699 -1.45880303 -0.96551358 -1.61551440 -2.06945329 -0.08435911
---
> [1] 1.62499634 -1.45880221 -0.96551285 -1.61551376 -2.06945265 -0.08435909
220,221c220,221
< [1] -8.781248e-05 1.855190e-05 5.257050e-05 2.242559e-05 6.381616e-05
< [6] 4.803586e-05
---
> [1] -8.888587e-05 1.875676e-05 5.313826e-05 2.266534e-05 6.445778e-05
> [6] 4.977037e-05
227c227
< [1] 974
---
> [1] 972
247c247
< [1] 8.452131e-06 -2.515249e-05 -3.569333e-06 -2.927416e-06 1.135145e-05
---
> [1] 8.452130e-06 -2.515249e-05 -3.569333e-06 -2.927416e-06 1.135145e-05
259c259
< [1] "Mean relative difference: 4.57795e-05"
---
> [1] "Mean relative difference: 4.622505e-05"
Running ‘newfam.R’
Comparing ‘newfam.Rout’ to ‘newfam.Rout.save’ ... OK
Running ‘nzp.R’
Comparing ‘nzp.Rout’ to ‘nzp.Rout.save’ ... OK
Running ‘predict.R’
Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ...156c156
< varbl3 5.766e-16 7.319e-01 0.000 1.000
---
> varbl3 7.393e-16 7.319e-01 1.01e-15 1.000
Running ‘raster.R’
Comparing ‘raster.Rout’ to ‘raster.Rout.save’ ... OK
Running ‘trans.R’
Comparing ‘trans.Rout’ to ‘trans.Rout.save’ ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... OK
checking PDF version of manual ... OK