• using R version 2.8.0 Patched (2008-11-19 r46992)
  • using session charset: UTF-8
  • checking for file 'aaMI/DESCRIPTION' ... OK
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  • this is package 'aaMI' version '1.0-1'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'aaMI' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    Found possibly global 'T' or 'F' in the following functions:
    read.CX read.FASTA read.GDoc
  • checking Rd files ... WARNING
    Rd files with unknown sections:
    read.CX.Rd: Author
    read.FASTA.Rd: Author
    read.GDoc.Rd: Author

    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • creating aaMI-Ex.R ... OK
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  • checking examples ... OK
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  • creating aaMI-manual.tex ... OK
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  • checking aaMI-manual.tex using pdflatex ... OK
    •