• using R version 2.14.1 Patched (2012-02-05 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘TWIX/DESCRIPTION’ ... OK
• this is package ‘TWIX’ version ‘0.2.10’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘TWIX’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  TWIX: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  bootTWIX: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
  scree.plot: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  trace.plot: warning in matrix(c(2, 1), nc = 2): partial argument match
  of 'nc' to 'ncol'
  trace.plot: warning in matrix(c(1, 1), nc = 1): partial argument match
  of 'nc' to 'ncol'
  tune.RF: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
  tune.TWIX: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  tune.rpart: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  tune.rpart : clus.tune.minbuck: warning in rpart.control(maxdepth =
  maxdepth, minsplit = z, minbuck = z, cp = cp, xval = 0): partial
  argument match of 'minbuck' to 'minbucket'
  tune.rpart : clus.tune.runs: warning in rpart.control(maxdepth =
  maxdepth, minsplit = minbuck[i], minbuck = minbuck[i], cp = cp, xval
  = 0): partial argument match of 'minbuck' to 'minbucket'
  tune.rpart: warning in rpart.control(maxdepth = maxdepth, minsplit =
  minbuck[i], minbuck = minbuck[i], cp = cp, xval = 0): partial
  argument match of 'minbuck' to 'minbucket'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... NOTE
  ‘library’ or ‘require’ call not declared from: ‘MASS’
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK