• using R version 2.14.1 Patched (2012-02-05 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• using options ‘--no-examples --no-tests --no-vignettes’
• checking for file ‘STAR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘STAR’ version ‘0.3-4’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘STAR’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  as.spikeTrain: no visible global function definition for ‘spikeTimes’
  gamObj.gampsth: warning in evalq(PoissonF, env =
  environment(object$lambdaFct)): partial argument match of 'env' to
  'envir'
  gamObj.gampsth: no visible binding for global variable ‘PoissonF’
  gammaMLE: multiple local function definitions for ‘rFct’ with different
  formal arguments
  gssObj.gsspsth: warning in evalq(gfit, env =
  environment(object$lambdaFct)): partial argument match of 'env' to
  'envir'
  gssObj.gsspsth: no visible binding for global variable ‘gfit’
  gssObj.gsspsth0: warning in evalq(gfit, env =
  environment(object$lambdaFct)): partial argument match of 'env' to
  'envir'
  gssObj.gsspsth0: no visible binding for global variable ‘gfit’
  invgaussMLE: multiple local function definitions for ‘rFct’ with
  different formal arguments
  lines.CountingProcessSamplePath: warning in evalq(st, env =
  environment(x$cpspFct)): partial argument match of 'env' to 'envir'
  lines.CountingProcessSamplePath: no visible binding for global variable
  ‘st’
  maxIntensity : targetFct: warning in matrix(p, nr = 1, dimnames =
  list(NULL, allVN)): partial argument match of 'nr' to 'nrow'
  maxIntensity: warning in matrix(posMax, nr = 1, dimnames = list(NULL,
  allVN)): partial argument match of 'nr' to 'nrow'
  mkAR: no visible binding for global variable ‘lN.1’
  mkSimFct: warning in ls(env = environment(m2uFctList[[fn]])): partial
  argument match of 'env' to 'envir'
  mkSimFct : <anonymous>: warning in eval(exp, env =
  environment(m2uFctList[[fn]])): partial argument match of 'env' to
  'envir'
  mkSimFct : <anonymous>: warning in assign(vn, value, env =
  envList[[fn]]): partial argument match of 'env' to 'envir'
  qqDuration: no visible binding for global variable ‘yi’
  qqDuration: no visible binding for global variable ‘si’
  thinProcess: no visible binding for global variable ‘targetFct’
  thinProcess: no visible binding for global variable ‘posMax’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  CAL1V.rda 26Kb 21Kb xz
  CAL2C.rda 25Kb 20Kb xz
  e060517ionon.rda 16Kb 14Kb xz
  e060817citron.rda 47Kb 37Kb xz
  e060817mix.rda 45Kb 35Kb xz
  e060817terpi.rda 48Kb 38Kb xz
  e070528citronellal.rda 44Kb 34Kb xz
  e070528spont.rda 15Kb 11Kb xz
  mPK.rda 161Kb 102Kb xz
  sPK.rda 30Kb 20Kb xz
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking examples ... SKIPPED
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... SKIPPED
• checking re-building of vignettes ... SKIPPED
• checking PDF version of manual ... OK