Check results for 'SSOAP'

using R version 2.14.2 RC (2012-02-23 r58468)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘SSOAP/DESCRIPTION’ ... OK
this is package ‘SSOAP’ version ‘0.9-0’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘SSOAP’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
createOperationDefinition: warning in eval(parse(text =
changeQuotes(txt)), env = env): partial argument match of 'env' to
'envir'
checking Rd files ... NOTE
prepare_Rd: SOAPClientInterface-class.Rd:38-40: Dropping empty section \examples
prepare_Rd: SOAPData.Rd:57-58: Dropping empty section \examples
prepare_Rd: SOAPFault.Rd:39-41: Dropping empty section \examples
prepare_Rd: SOAPResult-class.Rd:42-44: Dropping empty section \examples
prepare_Rd: SOAPResult.Rd:40-42: Dropping empty section \examples
prepare_Rd: SOAPServer-class.Rd:73-75: Dropping empty section \examples
prepare_Rd: SOAPServerDescription.Rd:56-58: Dropping empty section \examples
prepare_Rd: SOAPType-class.Rd:45-47: Dropping empty section \examples
prepare_Rd: WSDLMethod-class.Rd:57-59: Dropping empty section \examples
prepare_Rd: WSDLParseHandlers.Rd:46-47: Dropping empty section \examples
prepare_Rd: convertFromSOAP.Rd:36-38: Dropping empty section \examples
prepare_Rd: getReturnNode.Rd:37-39: Dropping empty section \examples
prepare_Rd: getSOAPType.Rd:38-40: Dropping empty section \examples
prepare_Rd: isHTTPError.Rd:48-50: Dropping empty section \examples
prepare_Rd: parseSOAP.Rd:45-47: Dropping empty section \examples
prepare_Rd: server.Rd:50-51: Dropping empty section \examples
prepare_Rd: toSOAP.Rd:68-69: Dropping empty section \examples
prepare_Rd: writeSOAP.Rd:111-113: Dropping empty section \examples
prepare_Rd: writeTypes.Rd:35-36: Dropping empty section \examples
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking examples ... ERROR
Running examples in ‘SSOAP-Ex.R’ failed
The error most likely occurred in:

> ### Name: writeInterface
> ### Title: Serialize generated interface to a file
> ### Aliases: writeInterface
> ### Keywords: programming IO
>
> ### ** Examples
>
> w = processWSDL(system.file("examples", "KEGG.wsdl", package = "SSOAP"))
> iface = genSOAPClientInterface(w)
> f = tempfile()
> writeInterface(iface, f)
> source(f)
Loading required package: XML
> ## Not run:
> ##D db = list_databases()
> ##D class(db)
> ##D class(db[[1]])
> ## End(Not run)
>
> u = "http://gmd.mpimp-golm.mpg.de/webservices/wsGoBioSpace.asmx?WSDL"
> z = processWSDL(u, port = 1)
> iface = genSOAPClientInterface(z)
Note: Method with signature "ClassDefinition#list" chosen for function "resolve",
target signature "ExtendedClassDefinition#SchemaCollection".
"SOAPType#SchemaCollection" would also be valid
Note: Method with signature "RestrictedStringDefinition#list" chosen for function "resolve",
target signature "RestrictedStringDefinition#SchemaCollection".
"SOAPType#SchemaCollection" would also be valid
> f = tempfile()
> writeInterface(iface, f)
Warning in FUN("Adduct"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("AdductHit"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("ArrayOfAdduct"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfArrayOfMassSearchHit"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfDepositor"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfFloat"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfFloat"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfFloat"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfFloat"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfMassSearchHit"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfProperty"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfShort"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfShort"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfShort"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfShort"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfShort"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ArrayOfSynonym"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("Depositor"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("DepositorIds.AdductIds"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("MassSearchHit"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("Property"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("SessionID.FormulaID"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("SessionID.mass.tolerance"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("SessionID.masses.tolerance.toleranceSelector"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("StringArray"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("StringArray"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("StringArray"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("StringArray"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("Synonym"[[1L]], ...) :
removing environment from coercion method with objects f, name, representation, where
Warning in FUN("ToleranceType"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("ToleranceType"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("guid"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
Warning in FUN("guid"[[1L]], ...) :
removing environment from coercion method with objects $.XMLFlatListTree, $.XMLHashTree, .First.lib, .InitSAXMethods, .S3MethodsClasses, .__C__Currency, .__C__DTDPublicIdentifier, .__C__Doctype, .__C__ExternalReference, .__C__FormattedInteger, .__C__FormattedNumber, .__C__HTMLInternalDocument, .__C__Percent, .__C__RXMLAbstractNode, .__C__SAXState, .__C__SchemaAttributeGroupTable, .__C__SchemaAttributeTable, .__C__SchemaElementTable, .__C__SchemaNotationTable, .__C__SchemaTypeTable, .__C__SimplifiedXMLNamespaceDefinitions, .__C__URI, .__C__URL, .__C__XMLAbstractDocument, .__C__XMLAbstractNode, .__C__XMLAttributeDeclNode, .__C__XMLAttributeNode, .__C__XMLCDataNode, .__C__XMLCodeDoc, .__C__XMLCodeFile, .__C__XMLCommentNode, .__C__XMLDTDNode, .__C__XMLDocument, .__C__XMLDocumentContent, .__C__XMLDocumentFragNode, .__C__XMLDocumentNode, .__C__XMLDocumentTypeNode, .__C__XMLEntityDeclNode, .__C__XMLFlatListTree, .__C__XMLFlatTree, .__C__XMLHashTree, .__C__XMLHashTreeNode, .__C__XMLInternalCDa [... truncated]
> source(f)
>
> a = GetAdducts()
Error in as(value, Class, strict = FALSE) :
no method or default for coercing "character" to "GenericSchemaType"
Calls: GetAdducts ... asMethod -> as<- -> asMethod -> as<- -> asMethod -> as<- -> as
Execution halted