• using R version 2.14.1 Patched (2012-02-05 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘SNPassoc/DESCRIPTION’ ... OK
• this is package ‘SNPassoc’ version ‘1.8-1’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘SNPassoc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  maxstat.matrix : pmax: warning in pmvnorm(lower, upper, mean, cor =
  sqrt(corr), ...): partial argument match of 'cor' to 'corr'
  plot.SNPinteraction: warning in axis(1, at = c(1:nrow(x.OK)), label =
  label.SNPs, las = 3, cex.axis = 0.7, col = "darkgreen"): partial
  argument match of 'label' to 'labels'
  plot.SNPinteraction: warning in axis(2, at = c(1:nrow(x.OK)), label =
  label.SNPs, las = 1, cex.axis = 0.7, col = "darkgreen"): partial
  argument match of 'label' to 'labels'
  plot.WGassociation: warning in axis(1, at = c(1:length(xx)), label =
  rep("", length(xx)), pos = 0): partial argument match of 'label' to
  'labels'
  plot.WGassociation: warning in axis(2, at = control.y, label =
  -control.y, pos = 1, xaxt = "n"): partial argument match of 'label'
  to 'labels'
  plotMissing: warning in axis(1, at = c(1:length(label.SNPs)), label =
  label.SNPs, las = 3, cex.axis = 0.7): partial argument match of
  'label' to 'labels'
• checking Rd files ... NOTE
  prepare_Rd: LD.Rd:69-71: Dropping empty section \examples
  prepare_Rd: plotWGassociation.Rd:64-66: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK