• using R version 2.14.2 RC (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘RRF/DESCRIPTION’ ... OK
• this is package ‘RRF’ version ‘1.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘RRF’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  RRF.default: warning in factor(rfout$outcl, levels = 1:nclass, label =
  levels(y)): partial argument match of 'label' to 'labels'
  RRF.default: warning in factor(rfout$outclts, levels = 1:nclass, label
  = levels(y)): partial argument match of 'label' to 'labels'
  RRF.default: warning in matrix(rfout$nodestatus, nc = ntree): partial
  argument match of 'nc' to 'ncol'
  RRF.default: warning in matrix(rfout$bestvar, nc = ntree): partial
  argument match of 'nc' to 'ncol'
  RRF.default: warning in matrix(rfout$nodepred, nc = ntree): partial
  argument match of 'nc' to 'ncol'
  RRF.default: warning in matrix(rfout$xbestsplit, nc = ntree): partial
  argument match of 'nc' to 'ncol'
  RRF.formula: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  predict.RRF: warning in matrix(t1$countts, nr = nclass, nc = ntest):
  partial argument match of 'nr' to 'nrow'
  predict.RRF: warning in matrix(t1$countts, nr = nclass, nc = ntest):
  partial argument match of 'nc' to 'ncol'
  print.RRF: warning in round(x$err.rate[x$ntree, "OOB"] * 100, dig = 2):
  partial argument match of 'dig' to 'digits'
  print.RRF: warning in round(x$test$err.rate[x$ntree, "Test"] * 100, dig
  = 2): partial argument match of 'dig' to 'digits'
  print.RRF: warning in round(100 * x$rsq[length(x$rsq)], dig = 2):
  partial argument match of 'dig' to 'digits'
  print.RRF: warning in round(x$test$mse[length(x$test$mse)], dig = 2):
  partial argument match of 'dig' to 'digits'
  print.RRF: warning in round(100 * x$test$rsq[length(x$test$rsq)], dig =
  2): partial argument match of 'dig' to 'digits'
  rrfImpute.formula: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... NOTE
  ‘data(package=)’ call not declared from: ‘MASS’
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK