• using R version 2.14.1 Patched (2012-02-05 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘PKtools/DESCRIPTION’ ... OK
• this is package ‘PKtools’ version ‘1.5-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘PKtools’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
  of 'nr' to 'nrow'
  AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
  of 'nc' to 'ncol'
  HTMLtools.NONMEM: warning in HTMLInitFile(outdir = nameDir, file =
  nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
  partial argument match of 'file' to 'filename'
  HTMLtools.PKNLME: warning in HTMLInitFile(outdir = nameDir, file =
  nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
  partial argument match of 'file' to 'filename'
  HTMLtools.WinBUGS: warning in HTMLInitFile(outdir = nameDir, file =
  nameFile & file, extension = "html", BackGroundColor = "#E9967A"):
  partial argument match of 'file' to 'filename'
  RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
  nameData$covnames): partial argument match of 'cov' to 'covdata'
  bugs.plot: no visible binding for global variable ‘n.sims’
  bugs.run: no visible binding for '<<-' assignment to ‘options.save’
  bugs.run: no visible binding for global variable ‘options.save’
  bugs.run.error: no visible binding for global variable ‘options.save’
  coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
  match of 'nr' to 'nrow'
  coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
  match of 'nc' to 'ncol'
  pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
  of 'nr' to 'nrow'
  pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
  of 'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking examples ... OK
• checking PDF version of manual ... OK