Check results for 'LifeTables'

using R version 2.14.2 RC (2012-02-23 r58468)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘LifeTables/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘LifeTables’ version ‘0.1’
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
checking for executable files ... OK
checking whether package ‘LifeTables’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
create.help.button : <anonymous>: warning in ghelp(topic = topic,
package = package, cont = gwindow(parent = parent.window, width =
700, height = 700)): partial argument match of 'cont' to 'container'
create.help.button: warning in gbutton(action = helpaction, cont =
parent.group): partial argument match of 'cont' to 'container'
create.plot.window: warning in ggroup(cont = win, horizontal = FALSE,
expand = TRUE): partial argument match of 'cont' to 'container'
create.plot.window: warning in ggroup(cont = g, horizontal = TRUE):
partial argument match of 'cont' to 'container'
create.plot.window: warning in glabel("Output type:", cont = g1):
partial argument match of 'cont' to 'container'
create.plot.window: warning in gdroplist(c("pdf", "postscript", "png",
"jpeg", "tiff", "bmp"), cont = g1): partial argument match of 'cont'
to 'container'
create.plot.window: warning in gbutton("Save", cont = g1): partial
argument match of 'cont' to 'container'
create.plot.window: warning in ggroup(cont = g, horizontal = TRUE,
expand = TRUE): partial argument match of 'cont' to 'container'
create.plot.window: warning in ggraphics(cont = g2, ps = ps, dpi = dpi,
...): partial argument match of 'cont' to 'container'
generateLT: warning in ggroup(horizontal = FALSE, cont = win): partial
argument match of 'cont' to 'container'
generateLT: warning in ggroup(horizontal = TRUE, cont = g): partial
argument match of 'cont' to 'container'
generateLT: warning in glabel("e0:", cont = par.g): partial argument
match of 'cont' to 'container'
generateLT: warning in gedit(width = 10, cont = par.g): partial
argument match of 'cont' to 'container'
generateLT: warning in glabel("alpha:", cont = par.g): partial argument
match of 'cont' to 'container'
generateLT: warning in gedit(0, width = 10, cont = par.g): partial
argument match of 'cont' to 'container'
generateLT: warning in glabel(" Changing values of e0 or alpha will
update the life table.", cont = par.g): partial argument match of
'cont' to 'container'
generateLT: warning in gtable(life.table$lt, cont = g, expand = TRUE):
partial argument match of 'cont' to 'container'
generateLT: warning in gbutton("Cancel", handler = function(h, ...)
dispose(win), cont = button.g): partial argument match of 'cont' to
'container'
generateLT: warning in gdroplist(plot.colnames, selected =
which(plot.colnames == plot.defaults$lt.col), cont = button.g):
partial argument match of 'cont' to 'container'
generateLT: warning in gcheckbox("Log scale", checked =
plot.defaults$log, cont = button.g, anchor = c(-1, 0)): partial
argument match of 'cont' to 'container'
generateLT: warning in gbutton(action = gaction(label = " Plot ", icon
= "newplot", handler = plotLTcolumn, action = list(mw = win, env =
e)), cont = button.g): partial argument match of 'cont' to
'container'
generateLT: warning in gbutton(action = gaction(label = " Export ",
icon = "save", handler = exportLT, action = list(mw = win, env = e)),
cont = button.g): partial argument match of 'cont' to 'container'
hmd.DA: no visible binding for global variable ‘hmd.1m0.train.m’
hmd.DA: no visible binding for global variable ‘hmd.5m0.train.m’
hmd.DA: no visible binding for global variable ‘hmd.1q0.train.m’
hmd.DA: no visible binding for global variable ‘hmd.5q0.train.m’
hmd.DA: no visible binding for global variable ‘hmd.1m0a.train.m’
hmd.DA: no visible binding for global variable ‘hmd.5m0a.train.m’
hmd.DA: no visible binding for global variable ‘hmd.1q0a.train.m’
hmd.DA: no visible binding for global variable ‘hmd.5q0a.train.m’
hmd.DA: no visible binding for global variable ‘hmd.1m0.train.f’
hmd.DA: no visible binding for global variable ‘hmd.5m0.train.f’
hmd.DA: no visible binding for global variable ‘hmd.1q0.train.f’
hmd.DA: no visible binding for global variable ‘hmd.5q0.train.f’
hmd.DA: no visible binding for global variable ‘hmd.1m0a.train.f’
hmd.DA: no visible binding for global variable ‘hmd.5m0a.train.f’
hmd.DA: no visible binding for global variable ‘hmd.1q0a.train.f’
hmd.DA: no visible binding for global variable ‘hmd.5q0a.train.f’
hmd.DA.mx: no visible binding for global variable ‘mlt.mx’
hmd.DA.mx: no visible binding for global variable ‘flt.mx’
hmd.DA.mx: no visible binding for global variable ‘class5’
modelLT.gui: warning in ggroup(horizontal = FALSE, cont = main.win):
partial argument match of 'cont' to 'container'
modelLT.gui: warning in gframe("<span color='blue'>Life Table
Settings</span>", markup = TRUE, horizontal = FALSE, cont = main.g):
partial argument match of 'cont' to 'container'
modelLT.gui: warning in glayout(cont = family.f): partial argument
match of 'cont' to 'container'
modelLT.gui: warning in glabel("Indicator:", cont = indicator.g):
partial argument match of 'cont' to 'container'
modelLT.gui: warning in gdroplist(indicators, cont = indicator.g,
selected = defaults$child.mort): partial argument match of 'cont' to
'container'
modelLT.gui: warning in glabel(" ", cont = indicator.g): partial
argument match of 'cont' to 'container'
modelLT.gui: warning in gedit(width = 10, cont = indicator.g): partial
argument match of 'cont' to 'container'
modelLT.gui: warning in glabel("Add adult mortality:", cont =
indicator.g): partial argument match of 'cont' to 'container'
modelLT.gui: warning in gcheckbox("45q15", checked =
!is.null(defaults$adult.mort), cont = indicator.g, handler =
function(h, ...) {: partial argument match of 'cont' to 'container'
modelLT.gui: warning in enabled(e$admort.value) <- svalue(h$obj):
partial argument match of 'cont' to 'container'
modelLT.gui: warning in }): partial argument match of 'cont' to
'container'
modelLT.gui: warning in gedit(if (is.null(defaults$adult.mort)) "" else
defaults$adult.mort, width = 10, cont = indicator.g): partial
argument match of 'cont' to 'container'
modelLT.gui: warning in glabel("Sex:", cont = indicator.g): partial
argument match of 'cont' to 'container'
modelLT.gui: warning in gdroplist(sex.values, cont = indicator.g,
selected = which(sex.values == defaults$sex)): partial argument match
of 'cont' to 'container'
modelLT.gui: warning in ggroup(horizontal = TRUE, cont = main.g):
partial argument match of 'cont' to 'container'
modelLT.gui: warning in gbutton("Quit", handler = quit.modelLT, cont =
button.g): partial argument match of 'cont' to 'container'
modelLT.gui: warning in gbutton(action = gaction(label = " Generate
Life Table ", icon = "dataframe", handler = generateLT, action =
list(mw = main.win, env = e)), cont = button.g): partial argument
match of 'cont' to 'container'
mortmod: no visible binding for global variable ‘lo.devs’
mortmod: no visible binding for global variable ‘averages.smooth’
mortmod: no visible binding for global variable ‘hi.devs’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... NOTE

Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
MLTobs.RData 611Kb 412Kb xz
checking examples ... OK
checking PDF version of manual ... OK