Check results for 'Hmisc'

using R version 2.14.2 RC (2012-02-23 r58468)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘Hmisc/DESCRIPTION’ ... OK
this is package ‘Hmisc’ version ‘3.9-2’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘Hmisc’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
Ecdf.default: warning in labcurve(curves, type = "s", lty = lty, col =
col, opts = label.curves): partial argument match of 'col' to 'col.'
Ecdf.formula: no visible global function definition for ‘terms.inner’
Ecdf.formula: no visible global function definition for
‘setup.2d.trellis’
Function.areg.boot: possible error in assign(fun.name[i], g[[i]], frame
= frame): unused argument(s) (frame = frame)
Function.areg.boot: possible error in assign(fun.name[i], g[[i]], where
= where): unused argument(s) (where = where)
Function.transcan: possible error in assign(fun.name, f, where =
where): unused argument(s) (where = where)
[.transcan: ... may be used in an incorrect context: ‘x[..., drop =
drop]’
[.transcan: ... may be used in an incorrect context: ‘list(...)’
areg.boot: warning in match.call(expand = FALSE): partial argument
match of 'expand' to 'expand.dots'
areg.boot: warning in sample(n, n, rep = TRUE): partial argument match
of 'rep' to 'replace'
aregImpute: warning in match.call(expand = FALSE): partial argument
match of 'expand' to 'expand.dots'
dataRep: warning in match.call(expand = FALSE): partial argument match
of 'expand' to 'expand.dots'
describe.formula: warning in match.call(expand = FALSE): partial
argument match of 'expand' to 'expand.dots'
drawPlot : Points: no visible binding for global variable ‘pch.to.use’
eip: possible error in assign(name, g, where = f): unused argument(s)
(where = f)
event.chart : legnd: possible error in legend(..., marks = pch): unused
argument(s) (marks = pch)
event.chart: no visible global function definition for ‘dev.ask’
formatDateTime: no visible global function definition for ‘timeDate’
histSpike: no visible global function definition for ‘oldCut’
importConvertDateTime: no visible global function definition for
‘timeDate’
impute.transcan: warning in assign(nam, v, env = .GlobalEnv): partial
argument match of 'env' to 'envir'
impute.transcan: possible error in assign(nam, v, where = where.out):
unused argument(s) (where = where.out)
impute.transcan: possible error in assign(nam, v, frame = frame.out):
unused argument(s) (frame = frame.out)
inverseFunction: multiple local function definitions for ‘h’ with
different formal arguments
latex.summary.formula.cross: no visible binding for global variable
‘col.just’
latexTranslate: no visible binding for global variable ‘alpha’
latexTranslate: no visible binding for global variable ‘delta’
latexTranslate: no visible binding for global variable ‘epsilon’
latexTranslate: no visible binding for global variable ‘varepsilon’
latexTranslate: no visible binding for global variable ‘zeta’
latexTranslate: no visible binding for global variable ‘eta’
latexTranslate: no visible binding for global variable ‘theta’
latexTranslate: no visible binding for global variable ‘vartheta’
latexTranslate: no visible binding for global variable ‘iota’
latexTranslate: no visible binding for global variable ‘lambda’
latexTranslate: no visible binding for global variable ‘mu’
latexTranslate: no visible binding for global variable ‘nu’
latexTranslate: no visible binding for global variable ‘xi’
latexTranslate: no visible binding for global variable ‘varpi’
latexTranslate: no visible binding for global variable ‘rho’
latexTranslate: no visible binding for global variable ‘varrho’
latexTranslate: no visible binding for global variable ‘sigma’
latexTranslate: no visible binding for global variable ‘varsigma’
latexTranslate: no visible binding for global variable ‘tau’
latexTranslate: no visible binding for global variable ‘upsilon’
latexTranslate: no visible binding for global variable ‘phi’
latexTranslate: no visible binding for global variable ‘carphi’
latexTranslate: no visible binding for global variable ‘chi’
latexTranslate: no visible binding for global variable ‘psi’
latexTranslate: no visible binding for global variable ‘omega’
latexTranslate: no visible binding for global variable ‘Delta’
latexTranslate: no visible binding for global variable ‘Theta’
latexTranslate: no visible binding for global variable ‘Lambda’
latexTranslate: no visible binding for global variable ‘Xi’
latexTranslate: no visible binding for global variable ‘Pi’
latexTranslate: no visible binding for global variable ‘Sigma’
latexTranslate: no visible binding for global variable ‘Upsilon’
latexTranslate: no visible binding for global variable ‘Phi’
latexTranslate: no visible binding for global variable ‘Psi’
latexTranslate: no visible binding for global variable ‘Omega’
lookupSASContents: no visible binding for global variable ‘NOBS’
lookupSASContents: no visible binding for global variable ‘memname’
lookupSASContents: no visible binding for global variable ‘memlabel’
matrix2dataFrame: no visible binding for global variable
‘origAttributes’
na.detail.response: possible error in eval(as.name(GFUN), local =
FALSE): unused argument(s) (local = FALSE)
nafitted.delete: no visible global function definition for
‘naresid.omit’
nafitted.delete: no visible global function definition for
‘naresid.exclude’
napredict.delete: no visible global function definition for
‘naresid.omit’
naresid.delete: no visible global function definition for
‘naresid.omit’
numericScale: no visible global function definition for ‘axis.time’
panel.Dotplot : Key: no visible global function definition for ‘key’
panel.Dotplot: multiple local function definitions for ‘Key’ with
different formal arguments
panel.Ecdf: warning in labcurve(curves, lty = lty[levnum], lwd =
lwd[levnum], col = col[levnum], opts = lc, grid = .R., ...): partial
argument match of 'col' to 'col.'
panel.Ecdf : Key: no visible global function definition for ‘key’
panel.Ecdf: multiple local function definitions for ‘Key’ with
different formal arguments
panel.plsmo : <anonymous>: no visible global function definition for
‘key’
panel.xYplot: warning in labcurve(curves, lty = lty[levnum], lwd =
lwd[levnum], col = col[levnum], opts = lc, grid = TRUE, ...): partial
argument match of 'col' to 'col.'
panel.xYplot : Key: no visible global function definition for ‘key’
panel.xYplot: multiple local function definitions for ‘Key’ with
different formal arguments
plot.Quantile2: warning in labcurve(pi[1:2], pl = TRUE, lty = lty, col
= col, xlim = xlim, ylim = ylim, opts = label.curves): partial
argument match of 'col' to 'col.'
plot.Quantile2: warning in labcurve(pi[i[-(1:2)]], pl = TRUE, lty =
lty, col = col, xlim = xlim, ylim = ylim, opts = label.curves):
partial argument match of 'col' to 'col.'
plot.Quantile2: warning in labcurve(pi[i], pl = TRUE, lty = lty, col =
col, xlim = xlim, ylim = ylim, opts = label.curves): partial argument
match of 'col' to 'col.'
plot.Quantile2: warning in labcurve(pi[5:6], pl = TRUE, lty = lty, col
= col, xlim = xlim, ylim = ylim, opts = label.curves): partial
argument match of 'col' to 'col.'
plot.Quantile2: warning in labcurve(pi[4 + i[-(1:2)]], pl = TRUE, lty =
lty, col = col, xlim = xlim, ylim = ylim, opts = label.curves):
partial argument match of 'col' to 'col.'
plot.Quantile2: warning in labcurve(pi[4 + i], pl = TRUE, lty = lty,
col = col, xlim = xlim, ylim = ylim, opts = label.curves): partial
argument match of 'col' to 'col.'
plot.summary.formula.response: warning in dotchart2(z, groups = vnd,
xlab = xlab, xlim = xlim, auxdata = if (superposeStrata) Ns else
stats[, js - which[w]], auxtitle = "N", sort = FALSE, pch = pch[if
(superposeStrata) is else w], dotfont = dotfont[w], add = add | w > 1
| (is > 1 && superposeStrata), reset.par = FALSE, ...): partial
argument match of 'sort' to 'sort.'
plot.summary.formula.response : <anonymous>: no visible global function
definition for ‘key’
plot.summary.formula.reverse: warning in dotchart2(zi, groups = vnd,
xlab = xlab, xlim = xlim, sort = FALSE, pch = pch[i], dotfont =
dotfont[i], add = i > 1, ...): partial argument match of 'sort' to
'sort.'
plot.summary.formula.reverse: warning in dotchart2(zi, groups = vnd,
auxdata = ftstats, xlab = xlab, xlim = xlim, sort = FALSE, pch =
pch[i], dotfont = dotfont[i], add = i > 1, ...): partial argument
match of 'sort' to 'sort.'
plot.summary.formula.reverse : <anonymous>: no visible global function
definition for ‘key’
plot.summary.formula.reverse: warning in dotchart2(stj, xlab = nam,
xlim = xlim, sort = FALSE, pch = c(91, if (FALSE) 183 else 16,
93)[j], dotfont = dotfont[1], add = j > 1, ...): partial argument
match of 'sort' to 'sort.'
plsmo: warning in labcurve(curves, lty = lty, col = col, opts =
label.curves, grid = grid): partial argument match of 'col' to 'col.'
print.char.list: no visible binding for global variable
‘colnames.width’
print.char.list: no visible binding for global variable
‘rownames.height’
print.responseSummary: no visible binding for global variable ‘attribs’
ps.slide: possible error in unix(paste("ghostview ", file, ".ps &", sep
= ""), output = FALSE): unused argument(s) (output = FALSE)
ps.slide: possible error in unix(paste("(gs -sDEVICE=pbm -sOutputFile=-
-r75 -q - quit.ps < ", file, ".ps | pnmflip -cw | ppmtopcx > ", file,
".pcx) &", sep = ""), output = FALSE): unused argument(s) (output =
FALSE)
ps.slide: possible error in unix(paste("(gs -sDEVICE=pbmraw
-sOutputFile=- -r300 -q - quit.ps < ", file, ".ps | pnmflip -cw |
pnmtotiff > ", file, ".tiff) &", sep = ""), output = FALSE): unused
argument(s) (output = FALSE)
ps.slide: no visible binding for global variable ‘ps.colors.rgb’
ps.slide: no visible binding for global variable ‘ps.fonts’
ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
hor, height = height, width = width, pointsize = 0.6 * pointsize *
max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
print.it = FALSE, onefile = !eps): partial argument match of 'hor' to
'horizontal'
ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
hor, print.it = FALSE, onefile = !eps): partial argument match of
'hor' to 'horizontal'
ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
hor, height = height, width = width, pointsize = 0.6 * pointsize *
max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
colors = cols, fonts = fonts, ...): partial argument match of 'hor'
to 'horizontal'
ps.slide: possible error in postscript(paste(file, ".ps", sep = ""),
hor = hor, height = height, width = width, pointsize = 0.6 *
pointsize * max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 +
sqrt(5))/2))), colors = cols, fonts = fonts, ...): unused argument(s)
(colors = cols)
ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
hor, colors = cols, fonts = fonts, ...): partial argument match of
'hor' to 'horizontal'
ps.slide: possible error in postscript(paste(file, ".ps", sep = ""),
hor = hor, colors = cols, fonts = fonts, ...): unused argument(s)
(colors = cols)
ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
hor, height = height, width = width, pointsize = 0.6 * pointsize *
max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
fg = foreground, bg = background, family = font, ...): partial
argument match of 'hor' to 'horizontal'
requirePackage: ... may be used in an incorrect context
rlegend: warning in strwidth(legend, u = "user", cex = cex): partial
argument match of 'u' to 'units'
rlegend: warning in strheight(legend, u = "user", cex = cex): partial
argument match of 'u' to 'units'
rm.boot : lldep: warning in eigen(cov, sym = TRUE): partial argument
match of 'sym' to 'symmetric'
rm.boot: warning in sample(clusters, rep = TRUE): partial argument
match of 'rep' to 'replace'
rm.boot: warning in sample(rr, n - lrr, rep = TRUE): partial argument
match of 'rep' to 'replace'
sas.get : <anonymous>: no visible global function definition for
‘is.dir’
sas.get : file.is.readable: no visible global function definition for
‘access’
sas.get: possible error in assign(name[i], dsi, where = where): unused
argument(s) (where = where)
setpdf: no visible global function definition for ‘pdf.graph’
setps : psfig: possible error in postscript(file = file, horizontal =
FALSE, width = width, height = height, pointsize = pointsize, fonts =
ps.fonts[fontNumber], font = 1, maximize = TRUE, onefile = onefile,
print.it = FALSE): unused argument(s) (font = 1, maximize = TRUE)
setps : psfig: possible error in postscript(file = file, horizontal =
FALSE, width = width, height = height, pointsize = pointsize, fonts =
ps.fonts[fontNumber], font = 1): unused argument(s) (font = 1)
summary.formula: warning in match.call(expand = FALSE): partial
argument match of 'expand' to 'expand.dots'
summary.formula: no visible global function definition for
‘terms.inner’
symbol.freq: warning in axis(1, at = 1:xp1, label = c(dx, "All/2"), srt
= srtx, adj = if (srtx > 0) 1 else 0.5): partial argument match of
'label' to 'labels'
symbol.freq: warning in axis(2, at = 1:yp1, label = c(dy, "All/2"), adj
= 1): partial argument match of 'label' to 'labels'
symbol.freq: warning in axis(1, at = xp, label = dx, srt = srtx, adj =
if (srtx > 0) 1 else 0.5): partial argument match of 'label' to
'labels'
symbol.freq: warning in axis(2, at = yp, label = dy): partial argument
match of 'label' to 'labels'
transcan: warning in match.call(expand = FALSE): partial argument match
of 'expand' to 'expand.dots'
transcan: no visible global function definition for ‘terms.inner’
transcan: no visible global function definition for ‘rpart’
transcan: no visible global function definition for ‘rpart.control’
uncbind: possible error in assign(paste(prefix, nn[i], suffix, sep =
""), x[, i], where = 1): unused argument(s) (where = 1)
varclus: possible error in hclust(sim = x, method = method): unused
argument(s) (sim = x)
zoom: no visible binding for global variable ‘usa’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... OK
checking for unstated dependencies in tests ... OK
checking tests ... OK
Running ‘consolidate.R’
checking PDF version of manual ... OK