• using R version 2.14.2 RC (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘HSROC/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘HSROC’ version ‘1.1.0’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘HSROC’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘HSROC/R/HSROC-internal.R’:
  .onAttach calls:
  cat("##\n## Hierarchical Summary Receiver Operating Characteristic package (HSROC)\n")
  cat("## Copyright (C) 2010-", this.year, " Ian Schiller and Nandini Dendukuri \n", sep = "")
  cat("##\n## Development of HSROC package was supported by grants from the \n")
  cat("## Canadian Institutes of Health Research (MOP #89857) \n")
  cat("## and the Fonds de la Recherche en Santé Québec. \n##\n")
  require(lattice, quietly = TRUE)
  require(coda, quietly = TRUE)
  require(MASS, quietly = TRUE)
  require(MCMCpack, quietly = TRUE)
  
  Package startup functions should not change the search path.
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  Initialization: warning in write.table(study.dep_par, file = file.ini,
  row.name = FALSE): partial argument match of 'row.name' to
  'row.names'
  Initialization: warning in write.table(study.indep_par, file =
  file.ini, append = TRUE, col.name = FALSE): partial argument match of
  'col.name' to 'col.names'
  Initialization: warning in write.table(study.ref_std, file = file.ini,
  append = TRUE, col.name = FALSE): partial argument match of
  'col.name' to 'col.names'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK