Check results for 'Biograph'

using R version 2.14.2 RC (2012-02-23 r58468)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘Biograph/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘Biograph’ version ‘1.0’
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
checking for executable files ... OK
checking whether package ‘Biograph’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
AgeTrans: no visible binding for global variable
‘date_in_month_or_year’
Biograph.long : <anonymous>: no visible binding for global variable
‘ncovariates’
Biograph.long : <anonymous>: no visible binding for global variable
‘namstates’
Biograph.long: no visible binding for global variable ‘timeunit’
Biograph.long: no visible binding for global variable ‘ncovariates’
Biograph.msm: no visible binding for global variable ‘timeunit’
Biograph.msm : <anonymous>: no visible binding for global variable
‘ncovariates’
Biograph.msm : <anonymous>: no visible binding for global variable
‘namstates’
Biograph.msm: no visible binding for global variable ‘namstates’
Biograph.mstate: no visible binding for global variable ‘numstates’
Biograph.mstate: no visible binding for global variable ‘namstates’
Biograph.mstate : <anonymous>: no visible binding for global variable
‘namstates’
Biograph.mvna: no visible binding for global variable ‘timeunit’
Biograph.mvna: no visible binding for global variable ‘namstates’
Biograph.mvna : <anonymous>: no visible binding for global variable
‘namstates’
CMC.ages: no visible binding for global variable ‘timeunit’
CMC.years: no visible binding for global variable ‘timeunit’
ChangeObservationWindow.e: no visible binding for global variable
‘nsample’
ChangeObservationWindow.t: no visible binding for global variable
‘timeunit’
Cumrates: no visible binding for global variable ‘namstates’
Cumrates: no visible binding for global variable ‘iagehigh’
Cumrates: no visible binding for global variable ‘numstates’
Cumrates: no visible binding for global variable ‘namage’
GLHS.Biograph: no visible binding for global variable ‘rrdat’
LexisOccExp: no visible binding for global variable
‘date_in_month_or_year’
Lexislines.episodes: no visible binding for global variable ‘survey’
Lexislines.episodes: no visible binding for global variable ‘timeunit’
Lexislines.episodes: no visible binding for global variable ‘namstates’
Lexislines.episodes: no visible binding for global variable ‘DES’
Lexislines.episodes: no visible binding for global variable ‘TstopY’
Lexislines.episodes: no visible binding for global variable ‘Tstopage’
Lexislines.episodes: no visible binding for global variable ‘lex.id’
MSLT.S: no visible binding for global variable ‘numstates’
MSLT.S.plot: no visible binding for global variable ‘namstates’
MSLT.S.plot: no visible binding for global variable ‘numstates’
MSLT.e: no visible binding for global variable ‘numstates’
Occup: no visible binding for global variable ‘iagehigh’
Occup: no visible binding for global variable ‘iagelow’
Occup: no visible binding for global variable ‘namage’
Occup: no visible binding for global variable ‘numstates’
Occup: warning in vector(mod = "numeric", length = 400): partial
argument match of 'mod' to 'mode'
Occup: no visible binding for global variable ‘namstates’
OverviewTransitions: no visible binding for global variable ‘iagelow’
OverviewTransitions: no visible binding for global variable ‘iagehigh’
OverviewTransitions: no visible binding for global variable ‘numstates’
OverviewTransitions: no visible binding for global variable ‘namstates’
OverviewTransitions: no visible binding for global variable
‘date_in_month_or_year’
OverviewTransitions: no visible binding for global variable ‘nage’
Parameters: no visible binding for '<<-' assignment to ‘nsample’
Parameters: no visible binding for global variable ‘numstates’
Parameters: no visible binding for global variable ‘namstates’
Parameters: no visible binding for global variable ‘nsample’
Parameters: no visible binding for '<<-' assignment to ‘iagelow’
Parameters: no visible binding for '<<-' assignment to ‘iagehigh’
Parameters: no visible binding for '<<-' assignment to ‘nage’
Parameters: no visible binding for global variable ‘iagehigh’
Parameters: no visible binding for global variable ‘iagelow’
Parameters: no visible binding for '<<-' assignment to ‘namage’
Parameters: no visible binding for '<<-' assignment to ‘ncovariates’
Parameters: no visible binding for '<<-' assignment to ‘ncmc_tr’
Parameters: no visible binding for '<<-' assignment to ‘maxtrans’
Parameters: no visible binding for global variable ‘ncmc_tr’
RateTable: no visible binding for global variable ‘iagelow’
RateTable: no visible binding for global variable ‘iagehigh’
RateTable: no visible binding for global variable ‘numstates’
RateTable: no visible binding for global variable ‘namstates’
RateTable: no visible binding for global variable ‘nage’
Rates: no visible binding for global variable ‘numstates’
Rates: no visible binding for global variable ‘namage’
Rates: no visible binding for global variable ‘namstates’
StackGraph: no visible binding for global variable ‘numstates’
Trans: no visible binding for global variable ‘iagelow’
Trans: no visible binding for global variable ‘iagehigh’
Trans: no visible binding for global variable ‘numstates’
Trans: no visible binding for global variable ‘namstates’
Trans: no visible binding for global variable ‘date_in_month_or_year’
Trans: no visible binding for global variable ‘nage’
TransitionAB: no visible binding for global variable
‘date_in_month_or_year’
YearTrans: no visible binding for global variable
‘date_in_month_or_year’
p.OverviewEpisodes: no visible binding for global variable ‘timeunit’
p.OverviewEpisodes: no visible binding for global variable ‘numstates’
p.OverviewEpisodes: no visible binding for global variable ‘namstates’
p.SamplePath: warning in vector(mod = "numeric", length = nss1):
partial argument match of 'mod' to 'mode'
p.SamplePath: warning in vector(mod = "numeric", length = nss): partial
argument match of 'mod' to 'mode'
p.SamplePath: no visible binding for global variable ‘namstates’
p.Trans: no visible binding for global variable ‘numstates’
p.Trans: no visible binding for global variable ‘namstates’
statesequence.ind: no visible binding for global variable ‘namstates’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... NOTE
‘library’ or ‘require’ call not declared from: ‘mstate’
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... OK
checking PDF version of manual ... OK