• using R version 2.10.1 Patched (2010-02-01 r51089)
  • using session charset: UTF-8
  • checking for file 'BLCOP/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'BLCOP' version '0.2.2'
  • checking package name space information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking whether package 'BLCOP' can be installed ... WARNING
    Found the following significant warnings:
    Warning: bad markup (extra space?) at runBLCOPTestSuite.Rd:13:18
    See http://www.r-project.org/nosvn/R.check/r-patched-linux-ix86/BLCOP-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the name space can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... WARNING
    prepare_Rd: BLResult-class.Rd:33-35: Dropping empty section \examples
    prepare_Rd: BLViews-class.Rd:30-32: Dropping empty section \examples
    prepare_Rd: COPResult-class.Rd:33-35: Dropping empty section \examples
    checkRd: (5) COPViews-class.Rd:11: Tag \code is invalid in a \code block
    checkRd: (5) addBLViews.Rd:39: Tag \code is invalid in a \code block
    prepare_Rd: replacers.Rd:27-29: Dropping empty section \examples
    prepare_Rd: bad markup (extra space?) at runBLCOPTestSuite.Rd:13:18
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... WARNING
    S4 class codoc mismatches from documentation object 'BLResult-class':
    Slots for class 'BLResult'
    Code: kappa posteriorCovar posteriorMean priorCovar priorMean tau
    views
    Docs: confIgnored posteriorCovar posteriorMean priorCovar priorMean
    tau views
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking examples ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking PDF version of manual ... OK