* installing *source* package 'spOccupancy' ... ** package 'spOccupancy' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 12.3.0' make[1]: Entering directory '/d/temp/RtmpY3M4kB/R.INSTALL749c59c9207c/spOccupancy/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PGOcc.cpp -o PGOcc.o PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': PGOcc.cpp:650:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 650 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ PGOcc.cpp:212:12: note: 'tmp_0' was declared here 212 | double tmp_0, tmp_02; | ^~~~~ PGOcc.cpp:636:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 636 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:193:10: note: 'betaStarSamples_r' was declared here 193 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:635:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 635 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:192:10: note: 'sigmaSqPsiSamples_r' was declared here 192 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:575:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 575 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:184:10: note: 'alphaStarSamples_r' was declared here 184 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ PGOcc.cpp:573:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 573 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:183:10: note: 'sigmaSqPSamples_r' was declared here 183 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idist.cpp -o idist.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intMsPGOcc.cpp -o intMsPGOcc.o intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': intMsPGOcc.cpp:780:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 780 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ intMsPGOcc.cpp:164:12: note: 'tmp_0' was declared here 164 | double tmp_0, tmp_02; | ^~~~~ intMsPGOcc.cpp:763:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 763 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:239:10: note: 'betaStarSamples_r' was declared here 239 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:762:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 762 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:238:10: note: 'sigmaSqPsiSamples_r' was declared here 238 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intPGOcc.cpp -o intPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfJSDM.cpp -o lfJSDM.o lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfJSDM.cpp:675:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 675 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:219:10: note: 'betaStarSamples_r' was declared here 219 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfJSDM.cpp:674:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 674 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:218:10: note: 'sigmaSqPsiSamples_r' was declared here 218 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsPGOcc.cpp -o lfMsPGOcc.o lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfMsPGOcc.cpp:1023:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1023 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ lfMsPGOcc.cpp:166:12: note: 'tmp_0' was declared here 166 | double tmp_0, tmp_02; | ^~~~~ lfMsPGOcc.cpp:931:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 931 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:290:10: note: 'betaStarSamples_r' was declared here 290 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:930:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 930 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:289:10: note: 'sigmaSqPsiSamples_r' was declared here 289 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:992:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 992 | SET_VECTOR_ELT(result_r, 12, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:281:10: note: 'alphaStarSamples_r' was declared here 281 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:991:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 991 | SET_VECTOR_ELT(result_r, 11, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:280:10: note: 'sigmaSqPSamples_r' was declared here 280 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkSpCov.cpp -o mkSpCov.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msPGOcc.cpp -o msPGOcc.o msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': msPGOcc.cpp:804:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 804 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ msPGOcc.cpp:156:12: note: 'tmp_0' was declared here 156 | double tmp_0, tmp_02; | ^~~~~ msPGOcc.cpp:723:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 723 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here 251 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:722:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here 250 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:778:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 778 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here 242 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msPGOcc.cpp:777:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 777 | SET_VECTOR_ELT(result_r, 9, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here 241 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c postHocLM.cpp -o postHocLM.o postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': postHocLM.cpp:335:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 335 | SET_VECTOR_ELT(result_r, 4, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ postHocLM.cpp:115:10: note: 'betaStarSamples_r' was declared here 115 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ postHocLM.cpp:334:21: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 334 | SET_VECTOR_ELT(result_r, 3, sigmaSqSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ postHocLM.cpp:114:10: note: 'sigmaSqSamples_r' was declared here 114 | SEXP sigmaSqSamples_r; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rpg.cpp -o rpg.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfJSDMNNGP.cpp:1104:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1104 | SET_VECTOR_ELT(result_r, 7, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:429:10: note: 'thetaSamples_r' was declared here 429 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1014:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1014 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:340:10: note: 'likeSamples_r' was declared here 340 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:1010:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1010 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:328:10: note: 'betaStarSamples_r' was declared here 328 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1112:23: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1112 | SET_VECTOR_ELT(result_r, 10, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:327:10: note: 'sigmaSqPsiSamples_r' was declared here 327 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:996:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 996 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:321:10: note: 'wSamples_r' was declared here 321 | SEXP wSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:987:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 987 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc); | ~~~~^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:316:10: note: 'lambdaSamples_r' was declared here 316 | SEXP lambdaSamples_r; | ^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:990:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 990 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:310:10: note: 'psiSamples_r' was declared here 310 | SEXP psiSamples_r; | ^~~~~~~~~~~~ sfJSDMNNGP.cpp:993:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 993 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:305:10: note: 'zSamples_r' was declared here 305 | SEXP zSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:984:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 984 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:298:10: note: 'betaSamples_r' was declared here 298 | SEXP betaSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:981:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 981 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:292:10: note: 'tauSqBetaSamples_r' was declared here 292 | SEXP tauSqBetaSamples_r; | ^~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1083:21: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1083 | SET_VECTOR_ELT(result_r, 0, betaCommSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:287:10: note: 'betaCommSamples_r' was declared here 287 | SEXP betaCommSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGP.cpp:1375:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1375 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ sfMsPGOccNNGP.cpp:242:12: note: 'tmp_0' was declared here 242 | double tmp_0, tmp_02; | ^~~~~ sfMsPGOccNNGP.cpp:1351:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1351 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:377:10: note: 'betaStarSamples_r' was declared here 377 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1255:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1255 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:376:10: note: 'sigmaSqPsiSamples_r' was declared here 376 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1342:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1342 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:368:10: note: 'alphaStarSamples_r' was declared here 368 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1341:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1341 | SET_VECTOR_ELT(result_r, 14, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:367:10: note: 'sigmaSqPSamples_r' was declared here 367 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o sfMsPGOccNNGPPredict.cpp: In function 'SEXPREC* sfMsPGOccNNGPPredict(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGPPredict.cpp:144:39: warning: 'nuIndx' may be used uninitialized [-Wmaybe-uninitialized] 144 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){ | ~~~~~~~^~~ sfMsPGOccNNGPPredict.cpp:109:26: note: 'nuIndx' was declared here 109 | int nTheta, phiIndx, nuIndx, sigmaSqIndx; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOcc.cpp -o spIntPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spIntPGOccNNGP.cpp:330:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 330 | double a, v, b, e, mu, var, aij; | ^ spIntPGOccNNGP.cpp:322:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 322 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOcc.cpp -o spMsPGOcc.o spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOcc.cpp:1169:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1169 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ spMsPGOcc.cpp:184:12: note: 'tmp_0' was declared here 184 | double tmp_0, tmp_02; | ^~~~~ spMsPGOcc.cpp:1146:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1146 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:301:10: note: 'betaStarSamples_r' was declared here 301 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1047:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1047 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here 300 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1137:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1137 | SET_VECTOR_ELT(result_r, 14, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:292:10: note: 'alphaStarSamples_r' was declared here 292 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1136:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1136 | SET_VECTOR_ELT(result_r, 13, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here 291 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOccNNGP.cpp:1208:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1208 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ spMsPGOccNNGP.cpp:233:12: note: 'tmp_0' was declared here 233 | double tmp_0, tmp_02; | ^~~~~ spMsPGOccNNGP.cpp:498:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 498 | double logDet; | ^~~~~~ spMsPGOccNNGP.cpp:467:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 467 | double a, v, b, e, mu, var, aij; | ^ spMsPGOccNNGP.cpp:1185:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1185 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:348:10: note: 'betaStarSamples_r' was declared here 348 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1085:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1085 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:347:10: note: 'sigmaSqPsiSamples_r' was declared here 347 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1176:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1176 | SET_VECTOR_ELT(result_r, 14, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:339:10: note: 'alphaStarSamples_r' was declared here 339 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1175:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1175 | SET_VECTOR_ELT(result_r, 13, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:338:10: note: 'sigmaSqPSamples_r' was declared here 338 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOcc.cpp -o spPGOcc.o spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOcc.cpp:919:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 919 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ spPGOcc.cpp:238:12: note: 'tmp_0' was declared here 238 | double tmp_0, tmp_02; | ^~~~~ spPGOcc.cpp:900:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 900 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:218:10: note: 'betaStarSamples_r' was declared here 218 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:899:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 899 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:217:10: note: 'sigmaSqPsiSamples_r' was declared here 217 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:891:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 891 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:209:10: note: 'alphaStarSamples_r' was declared here 209 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOcc.cpp:807:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 807 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:208:10: note: 'sigmaSqPSamples_r' was declared here 208 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGP.cpp -o spPGOccNNGP.o spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOccNNGP.cpp:999:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 999 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ spPGOccNNGP.cpp:292:12: note: 'tmp_0' was declared here 292 | double tmp_0, tmp_02; | ^~~~~ spPGOccNNGP.cpp:400:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 400 | double a, v, b, e, mu, var, aij; | ^ spPGOccNNGP.cpp:389:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 389 | double logDet; | ^~~~~~ spPGOccNNGP.cpp:980:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 980 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:272:10: note: 'betaStarSamples_r' was declared here 272 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:979:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 979 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:271:10: note: 'sigmaSqPsiSamples_r' was declared here 271 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:971:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 971 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:263:10: note: 'alphaStarSamples_r' was declared here 263 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:887:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 887 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:262:10: note: 'sigmaSqPSamples_r' was declared here 262 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccPredict.cpp -o spPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stMsPGOccNNGP.cpp:1665:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1665 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ stMsPGOccNNGP.cpp:257:12: note: 'tmp_0' was declared here 257 | double tmp_0, tmp_02; | ^~~~~ stMsPGOccNNGP.cpp:1641:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1641 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:418:10: note: 'ar1ThetaSamples_r' was declared here 418 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1640:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1640 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:417:10: note: 'etaSamples_r' was declared here 417 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stMsPGOccNNGP.cpp:1629:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1629 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:403:10: note: 'betaStarSamples_r' was declared here 403 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1514:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1514 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:402:10: note: 'sigmaSqPsiSamples_r' was declared here 402 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1620:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1620 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:394:10: note: 'alphaStarSamples_r' was declared here 394 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1510:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1510 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:393:10: note: 'sigmaSqPSamples_r' was declared here 393 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGP.cpp -o stPGOccNNGP.o stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stPGOccNNGP.cpp:513:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 513 | double logDet; | ^~~~~~ stPGOccNNGP.cpp:445:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 445 | double a, v, b, e, mu, var, aij; | ^ stPGOccNNGP.cpp:1160:85: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 1160 | Rprintf("\trho\t\t%3.1f\t\t%1.5f\n", 100.0*accept2[rhoIndx], exp(tuning[rhoIndx])); | ^~~~~~~ stPGOccNNGP.cpp:427:61: note: 'rhoIndx' was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ stPGOccNNGP.cpp:950:17: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 950 | theta[sigmaSqTIndx] = rigamma(aSigmaSqTPost, bSigmaSqTPost); | ^~~~~~~~~~~~ stPGOccNNGP.cpp:427:47: note: 'sigmaSqTIndx' was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:1213:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1213 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:310:10: note: 'betaStarSamples_r' was declared here 310 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1112:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1112 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:309:10: note: 'sigmaSqPsiSamples_r' was declared here 309 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1204:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1204 | SET_VECTOR_ELT(result_r, 8, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:301:10: note: 'alphaStarSamples_r' was declared here 301 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1118:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1118 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:300:10: note: 'sigmaSqPSamples_r' was declared here 300 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1224:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1224 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:291:10: note: 'etaSamples_r' was declared here 291 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcMsPGOccNNGP.cpp:1452:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1452 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ svcMsPGOccNNGP.cpp:249:12: note: 'tmp_0' was declared here 249 | double tmp_0, tmp_02; | ^~~~~ svcMsPGOccNNGP.cpp:1428:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1428 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:383:10: note: 'betaStarSamples_r' was declared here 383 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1331:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1331 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:382:10: note: 'sigmaSqPsiSamples_r' was declared here 382 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1419:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1419 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:374:10: note: 'alphaStarSamples_r' was declared here 374 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1418:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1418 | SET_VECTOR_ELT(result_r, 14, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:373:10: note: 'sigmaSqPSamples_r' was declared here 373 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGBinomNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGBinomNNGP.cpp:324:12: note: 'logDet' was declared here 324 | double logDet; | ^~~~~~ svcPGBinomNNGP.cpp:813:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 813 | SET_VECTOR_ELT(result_r, 10, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:241:10: note: 'betaStarSamples_r' was declared here 241 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:812:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 812 | SET_VECTOR_ELT(result_r, 9, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:240:10: note: 'sigmaSqPsiSamples_r' was declared here 240 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGOccNNGP.cpp:1097:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1097 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ svcPGOccNNGP.cpp:308:12: note: 'tmp_0' was declared here 308 | double tmp_0, tmp_02; | ^~~~~ svcPGOccNNGP.cpp:794:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 794 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGOccNNGP.cpp:408:12: note: 'logDet' was declared here 408 | double logDet; | ^~~~~~ svcPGOccNNGP.cpp:1078:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1078 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here 288 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:1077:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1077 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:287:10: note: 'sigmaSqPsiSamples_r' was declared here 287 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:1069:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1069 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:279:10: note: 'alphaStarSamples_r' was declared here 279 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:982:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 982 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here 278 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTMsPGOccNNGP.cpp:1791:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1791 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ svcTMsPGOccNNGP.cpp:271:12: note: 'tmp_0' was declared here 271 | double tmp_0, tmp_02; | ^~~~~ svcTMsPGOccNNGP.cpp:1767:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1767 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:436:10: note: 'ar1ThetaSamples_r' was declared here 436 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1766:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1766 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:435:10: note: 'etaSamples_r' was declared here 435 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1755:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1755 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:421:10: note: 'betaStarSamples_r' was declared here 421 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1636:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1636 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:420:10: note: 'sigmaSqPsiSamples_r' was declared here 420 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1746:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1746 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:412:10: note: 'alphaStarSamples_r' was declared here 412 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1632:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1632 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:411:10: note: 'sigmaSqPSamples_r' was declared here 411 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGBinomNNGP.cpp:681:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 681 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGBinomNNGP.cpp:369:12: note: 'logDet' was declared here 369 | double logDet; | ^~~~~~ svcTPGBinomNNGP.cpp:1050:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1050 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:274:10: note: 'etaSamples_r' was declared here 274 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1042:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1042 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:262:10: note: 'betaStarSamples_r' was declared here 262 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1041:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1041 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:261:10: note: 'sigmaSqPsiSamples_r' was declared here 261 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGOccNNGP.cpp:894:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 894 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGOccNNGP.cpp:457:12: note: 'logDet' was declared here 457 | double logDet; | ^~~~~~ svcTPGOccNNGP.cpp:1238:53: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 1238 | REAL(acceptSamples_r)[s * rhoIndx] = accept[rhoIndx]/batchLength; | ^~~~~~~ svcTPGOccNNGP.cpp:439:61: note: 'rhoIndx' was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ svcTPGOccNNGP.cpp:1035:17: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 1035 | theta[sigmaSqTIndx] = rigamma(aSigmaSqTPost, bSigmaSqTPost); | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:439:47: note: 'sigmaSqTIndx' was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:1319:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1319 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:319:10: note: 'betaStarSamples_r' was declared here 319 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1199:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1199 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:318:10: note: 'sigmaSqPsiSamples_r' was declared here 318 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1310:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1310 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:310:10: note: 'alphaStarSamples_r' was declared here 310 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1205:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1205 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:309:10: note: 'sigmaSqPSamples_r' was declared here 309 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1330:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1330 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:300:10: note: 'etaSamples_r' was declared here 300 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tMsPGOcc.cpp -o tMsPGOcc.o tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tMsPGOcc.cpp:1168:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ tMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here 183 | double tmp_0, tmp_02; | ^~~~~ tMsPGOcc.cpp:1038:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1038 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:312:10: note: 'betaStarSamples_r' was declared here 312 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1037:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1037 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:311:10: note: 'sigmaSqPsiSamples_r' was declared here 311 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1034:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1034 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:303:10: note: 'alphaStarSamples_r' was declared here 303 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1033:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1033 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:302:10: note: 'sigmaSqPSamples_r' was declared here 302 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1147:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1147 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:279:10: note: 'thetaSamples_r' was declared here 279 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tMsPGOcc.cpp:1146:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1146 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:278:10: note: 'etaSamples_r' was declared here 278 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tPGOcc.cpp -o tPGOcc.o tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tPGOcc.cpp:808:58: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 808 | F77_NAME(dcopy)(&nTheta, theta, &inc, &REAL(thetaSamples_r)[sPost*nTheta], &inc); | ~~~~^~~~~~~~~~~~~~~~ tPGOcc.cpp:350:10: note: 'thetaSamples_r' was declared here 350 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tPGOcc.cpp:815:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 815 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:226:10: note: 'betaStarSamples_r' was declared here 226 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:813:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 813 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:225:10: note: 'sigmaSqPsiSamples_r' was declared here 225 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:821:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 821 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:217:10: note: 'alphaStarSamples_r' was declared here 217 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tPGOcc.cpp:819:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 819 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:216:10: note: 'sigmaSqPSamples_r' was declared here 216 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:912:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 912 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:207:10: note: 'etaSamples_r' was declared here 207 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o g++ -std=gnu++17 -shared -s -static-libgcc -o spOccupancy.dll tmp.def PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpY3M4kB/R.INSTALL749c59c9207c/spOccupancy/src' make[1]: Entering directory '/d/temp/RtmpY3M4kB/R.INSTALL749c59c9207c/spOccupancy/src' make[1]: Leaving directory '/d/temp/RtmpY3M4kB/R.INSTALL749c59c9207c/spOccupancy/src' installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-spOccupancy/00new/spOccupancy/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'spOccupancy' as spOccupancy_0.7.6.zip * DONE (spOccupancy)