* installing *source* package 'hmcdm' ... ** package 'hmcdm' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 12.3.0' make[1]: Entering directory '/d/temp/RtmpIpn5UB/R.INSTALL206f06da3109d/hmcdm/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c basic_functions.cpp -o basic_functions.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract_functions.cpp -o extract_functions.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mcmc_functions.cpp -o mcmc_functions.o mcmc_functions.cpp: In function 'Rcpp::List parm_update_HO_RT_joint_g(const arma::cube&, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::mat&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, arma::mat, double, arma::vec, double, double)': mcmc_functions.cpp:1178:36: warning: 't_star' may be used uninitialized [-Wmaybe-uninitialized] 1178 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 | t_star,Q_matrix,Design_array,i).t(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc_functions.cpp:1145:61: note: 't_star' was declared here 1145 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star; | ^~~~~~ mcmc_functions.cpp: In function 'Rcpp::List parm_update_HO_RT_sep_g(arma::cube, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, double, double, arma::vec, double, double)': mcmc_functions.cpp:637:36: warning: 't_star' may be used uninitialized [-Wmaybe-uninitialized] 637 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)), | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 | t_star,Q_matrix,Design_array,i).t(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc_functions.cpp:606:61: note: 't_star' was declared here 606 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c resp_functions.cpp -o resp_functions.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rt_functions.cpp -o rt_functions.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c trans_functions.cpp -o trans_functions.o trans_functions.cpp: In function 'arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)': trans_functions.cpp:532:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 532 | for(unsigned int i=0; i::Mat(arma::uword, arma::uword) [with eT = double]', inlined from 'arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)' at trans_functions.cpp:529:24: D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:65:21: warning: 'K' may be used uninitialized [-Wmaybe-uninitialized] 65 | , n_elem(in_n_rows*in_n_cols) | ~~~~~~~~~^~~~~~~~~~ trans_functions.cpp: In function 'arma::cube sim_alphas(std::string, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable&>, Rcpp::Nullable >, Rcpp::Nullable&>, int, int, Rcpp::Nullable&>, Rcpp::Nullable >)': trans_functions.cpp:507:16: note: 'K' was declared here 507 | unsigned int K; | ^ g++ -std=gnu++17 -shared -s -static-libgcc -o hmcdm.dll tmp.def RcppExports.o basic_functions.o extract_functions.o mcmc_functions.o resp_functions.o rt_functions.o trans_functions.o -fopenmp -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpIpn5UB/R.INSTALL206f06da3109d/hmcdm/src' make[1]: Entering directory '/d/temp/RtmpIpn5UB/R.INSTALL206f06da3109d/hmcdm/src' make[1]: Leaving directory '/d/temp/RtmpIpn5UB/R.INSTALL206f06da3109d/hmcdm/src' installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-hmcdm/00new/hmcdm/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'hmcdm' as hmcdm_2.1.1.zip * DONE (hmcdm)