* installing *source* package 'BoomSpikeSlab' ... ** package 'BoomSpikeSlab' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 12.3.0' make[1]: Entering directory '/d/temp/Rtmpu8uGwe/R.INSTALL1690c933443/BoomSpikeSlab/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boom_spike_slab_init.cc -o boom_spike_slab_init.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22, from logit_spike_slab_wrapper.cc:17: D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from logit_spike_slab_wrapper.cc:14: utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BinomialLogitCompositeSpikeSlabSampler]': logit_spike_slab_wrapper.cc:95:46: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mlm_spike_slab_wrapper.cc -o mlm_spike_slab_wrapper.o In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp:26, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/MLVS.hpp:23, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.hpp:24, from mlm_spike_slab_wrapper.cc:2: D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nested_regression_wrapper.cc -o nested_regression_wrapper.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nnet_wrapper.cc -o nnet_wrapper.o In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Nnet/GaussianFeedForwardNeuralNetwork.hpp:21, from nnet_wrapper.cc:3: D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Nnet/Nnet.hpp: In function 'void BOOM::Nnet::to_binary(const BOOM::Vector&, std::vector&)': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Nnet/Nnet.hpp:40:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 40 | for (int i = 0; i < numeric.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22, from nnet_wrapper.cc:11: D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c poisson_spike_slab_wrapper.cc -o poisson_spike_slab_wrapper.o In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp:30, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp:24, from poisson_spike_slab_wrapper.cc:4: D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from poisson_spike_slab_wrapper.cc:16: utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::PoissonRegressionSpikeSlabSampler]': poisson_spike_slab_wrapper.cc:55:44: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c probit_spike_slab_wrapper.cc -o probit_spike_slab_wrapper.o In file included from probit_spike_slab_wrapper.cc:14: utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BinomialProbitCompositeSpikeSlabSampler]': probit_spike_slab_wrapper.cc:80:46: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quantile_spike_wrapper.cc -o quantile_spike_wrapper.o In file included from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/Glm/PosteriorSamplers/QuantileRegressionPosteriorSampler.hpp:28, from quantile_spike_wrapper.cc:4: D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': D:/RCompile/CRANpkg/lib/4.3/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from quantile_spike_wrapper.cc:13: utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::QuantileRegressionSpikeSlabSampler]': quantile_spike_wrapper.cc:50:44: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shrinkage_regression_wrapper.cc -o shrinkage_regression_wrapper.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spike_slab_wrapper.cc -o spike_slab_wrapper.o In file included from spike_slab_wrapper.cc:23: utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BregVsSampler]': spike_slab_wrapper.cc:113:48: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::AdaptiveSpikeSlabRegressionSampler]': spike_slab_wrapper.cc:135:48: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] utils.h: In instantiation of 'void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::SpikeSlabDaRegressionSampler]': spike_slab_wrapper.cc:157:46: required from here utils.h:35:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I`D:/RCompile/recent/R-4.3.3/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'D:/RCompile/CRANpkg/lib/4.3/Boom/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c splines.cc -o splines.o splines.cc: In function 'SEXPREC* boom_spike_slab_Bspline_basis(SEXP, SEXP)': splines.cc:38:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 38 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ splines.cc: In function 'SEXPREC* boom_spike_slab_Mspline_basis(SEXP, SEXP)': splines.cc:58:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 58 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ splines.cc: In function 'SEXPREC* boom_spike_slab_Ispline_basis(SEXP, SEXP)': splines.cc:77:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 77 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o BoomSpikeSlab.dll tmp.def boom_spike_slab_init.o logit_spike_slab_wrapper.o mlm_spike_slab_wrapper.o nested_regression_wrapper.o nnet_wrapper.o poisson_spike_slab_wrapper.o probit_spike_slab_wrapper.o quantile_spike_wrapper.o shrinkage_regression_wrapper.o spike_slab_wrapper.o splines.o D:/RCompile/CRANpkg/lib/4.3/Boom/lib/x64/libboom.a -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/Rtmpu8uGwe/R.INSTALL1690c933443/BoomSpikeSlab/src' make[1]: Entering directory '/d/temp/Rtmpu8uGwe/R.INSTALL1690c933443/BoomSpikeSlab/src' make[1]: Leaving directory '/d/temp/Rtmpu8uGwe/R.INSTALL1690c933443/BoomSpikeSlab/src' installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-BoomSpikeSlab/00new/BoomSpikeSlab/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BoomSpikeSlab' as BoomSpikeSlab_1.2.6.zip * DONE (BoomSpikeSlab)