• using R version 2.11.1 Patched (2010-07-29 r52657)
• using session charset: ISO8859-1
• checking for file 'caret/DESCRIPTION' ... OK
• this is package 'caret' version '4.85'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'caret' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking whether the name space can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  QuinlanAttributes.data.frame: no visible binding for global variable
  'QuinlanDescription'
  QuinlanAttributes.matrix: no visible binding for global variable
  'QuinlanDescription'
  bwplot.diff.resamples: no visible binding for global variable 'Metric'
  bwplot.resamples: no visible binding for global variable 'Model'
  bwplot.resamples: no visible binding for global variable 'Metric'
  checkConditionalX: no visible binding for global variable '.outcome'
  classLevels.splsda: no visible global function definition for 'ilevels'
  createGrid : lvqGrid: no visible binding for global variable '.k'
  createGrid : lvqGrid: no visible binding for global variable '.size'
  createModel: possible error in rda(trainX, trainY, gamma =
  tuneValue$.gamma, lambda = tuneValue$.lambda, ...): unused
  argument(s) (gamma = tuneValue$.gamma, lambda = tuneValue$.lambda)
  createModel: no visible global function definition for
  'randomForestNWS'
  createModel: no visible global function definition for 'rfLSF'
  createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
  polydot, kpar = list(degree = tuneValue$.degree, scale =
  tuneValue$.scale, offset = 1), ...): unused argument(s) (kernel =
  polydot, kpar = list(degree = tuneValue$.degree, scale =
  tuneValue$.scale, offset = 1))
  createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
  rbfdot, kpar = list(sigma = tuneValue$.sigma), ...): unused
  argument(s) (kernel = rbfdot, kpar = list(sigma = tuneValue$.sigma))
  createModel: possible error in rvm(as.matrix(trainX), trainY, kernel =
  vanilladot(), ...): unused argument(s) (kernel = vanilladot())
  densityplot.diff.resamples: no visible binding for global variable
  'Metric'
  densityplot.diff.resamples: no visible binding for global variable
  'ind'
  densityplot.resamples: no visible binding for global variable 'Model'
  densityplot.resamples: no visible binding for global variable 'Metric'
  dotplot.resamples: no visible binding for global variable 'Model'
  dotplot.resamples: no visible binding for global variable 'Metric'
  icr.formula: no visible binding for global variable 'thresh'
  levelplot.diff.resamples: no visible binding for global variable
  'Metric'
  plot.rfe: no visible binding for global variable 'Selected'
  plot.train: no visible binding for global variable 'parameter'
  plotClassProbs: no visible binding for global variable 'Observed'
  predictionFunction: possible error in attributes(modelFit, "model"):
  unused argument(s) ("model")
  predictionFunction: no visible binding for global variable '.alpha'
  predictors.gbm: no visible binding for global variable 'rel.inf'
  predictors.sda: no visible binding for global variable 'varIndex'
  predictors.smda: no visible binding for global variable 'varIndex'
  resamples.default: no visible binding for global variable 'Variables'
  rfe.default: no visible binding for global variable 'Variables'
  splom.resamples: no visible binding for global variable 'Model'
  splom.resamples: no visible binding for global variable 'Metric'
  tuneScheme: no visible binding for global variable '.alpha'
  tuneScheme: no visible binding for global variable '.phi'
  tuneScheme: no visible binding for global variable '.lambda'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking package vignettes in 'inst/doc' ... NOTE
  *** PDFLaTeX Errors ***
  File d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretMisc.Rnw :
  running 'texi2dvi' on 'caretMisc.tex' failed
  LaTeX errors:
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretMisc.tex:296: Undefin
  ed control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretMisc.tex:297: Undefin
  ed control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  File d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.Rnw :
  running 'texi2dvi' on 'caretSelection.tex' failed
  LaTeX errors:
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:99: Und
  efined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:100: Un
  defined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:101: Un
  defined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:151: Un
  defined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:152: Un
  defined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretSelection.tex:153: Un
  defined control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  File d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretTrain.Rnw :
  running 'texi2dvi' on 'caretTrain.tex' failed
  LaTeX errors:
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretTrain.tex:118: Undefi
  ned control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretTrain.tex:119: Undefi
  ned control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
  d:/Rcompile/CRANpkg/local/2.11/caret.Rcheck/inst/doc/caretTrain.tex:120: Undefi
  ned control sequence
  The control sequence at the end of the top line
  of your error message was never \def'ed. If you have
  misspelled it (e.g., `\hobx'), type `I' and the correct
• checking PDF version of manual ... OK