• using R version 2.15.3 (2013-03-01)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'waveclock/DESCRIPTION' ... OK
• this is package 'waveclock' version '1.0-4'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'waveclock' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... NOTE
  Foreign function call with 'PACKAGE' argument in a different package:
  .C("Sbee_annealing", ..., PACKAGE = "Rwave")
  See the chapter 'System and foreign language interfaces' of the
  'Writing R Extensions' manual.
• checking R code for possible problems ... NOTE
  waveclock: warning in axis(1, at + bt * (lt - time.limits[1]), lab =
  lt): partial argument match of 'lab' to 'labels'
  waveclock: warning in axis(2, pp, lab = lp): partial argument match of
  'lab' to 'labels'
  waveclock: warning in matrix(NA, nc = max(c(0, chains)), nr = N):
  partial argument match of 'nr' to 'nrow'
  waveclock: warning in matrix(NA, nc = max(c(0, chains)), nr = N):
  partial argument match of 'nc' to 'ncol'
  waveclock: warning in matrix(NA, nr = max(c(0, chains + 1)), nc = 8):
  partial argument match of 'nr' to 'nrow'
  waveclock: warning in matrix(NA, nr = max(c(0, chains + 1)), nc = 8):
  partial argument match of 'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... ERROR
  Running examples in 'waveclock-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: waveclock
  > ### Title: Reconstruction of the modal frequencies in a time series using
  > ### continuous wavelet transformation and the "crazy climbers" algorithm
  > ### Aliases: waveclock
  > ### Keywords: ts
  >
  > ### ** Examples
  >
  > set.seed( 1 )
  > freq <- 6 # data point every 10 minutes
  > T <- 24 * 5 * freq
  > t <- ( 0:T ) / freq
  >
  > # models an initial 'spike' and slow background trend
  > spike <- 0.5 * dgamma( t / 24, 2, 10 )
  > trend <- rowSums( poly( t, 2 ) %*% rnorm( 2 ) )
  > background <- spike + trend
  >
  > # exponentially damped circadian signal with random phase
  > amplitude <- sqrt( 2 ) * exp( -t / ( 24 * 2 ) )
  > period <- 24
  > phase <- runif( 1 ) * 2 * pi
  > signal <- amplitude * sin( t / period * 2 * pi + phase )
  >
  > # Gaussian noise
  > noise <- 0.15 * rnorm( T + 1 )
  >
  > # simulated luminescence trace
  > luminescence.trace <- ts( signal + background + noise, start = 0, freq = freq )
  > plot( luminescence.trace )
  >
  > # wavelet analysis
  > result <- waveclock( luminescence.trace )
  Nb of chains > reserved number. Increase the nbchain.
  Chain number 1(size: 1033 , 97 nodes):morvelets; 1033 194Error in rskel[j] <- Re(cwtinput[bridge[j] - bridge[1] + 1, aridge[j]]) :
  replacement has length zero
  Calls: waveclock ... do.call -> my.crcrec -> regrec -> ridrec -> zeroskeleton
  Execution halted