• using R version 2.14.2 (2012-02-29)
  • using platform: i386-pc-mingw32 (32-bit)
  • using session charset: ISO8859-1
  • checking for file 'sp/DESCRIPTION' ... OK
  • this is package 'sp' version '0.9-99'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking whether package 'sp' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • loading checks for arch 'x64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking examples ...
    ** running examples for arch 'i386' ... OK
    ** running examples for arch 'x64' ... OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ...
    ** running tests for arch 'i386' OK
    Running 'base.R'
    Comparing 'base.Rout' to 'base.Rout.save' ... OK
    Running 'fail1.R'
    Comparing 'fail1.Rout' to 'fail1.Rout.save' ... OK
    Running 'grid.R'
    Comparing 'grid.Rout' to 'grid.Rout.save' ...28,43c28,35
    < part.a part.b dist soil
    < Min. : 0.0000 Min. : 0.0000 Min. : 0.0000 Min. : 1.000
    < 1st Qu.: 0.0000 1st Qu.: 0.0000 1st Qu.: 0.1193 1st Qu.: 1.000
    < Median : 0.0000 Median : 1.0000 Median : 0.2715 Median : 1.000
    < Mean : 0.3986 Mean : 0.6014 Mean : 0.2971 Mean : 1.578
    < 3rd Qu.: 1.0000 3rd Qu.: 1.0000 3rd Qu.: 0.4402 3rd Qu.: 2.000
    < Max. : 1.0000 Max. : 1.0000 Max. : 0.9926 Max. : 3.000
    < NA's :5009.0000 NA's :5009.0000 NA's :5009.0000 NA's :5009.000
    < ffreq
    < 1 : 779
    < 2 :1335
    < 3 : 989
    < NA's:5009
    <
    <
    <
    ---
    > part.a part.b dist soil ffreq
    > Min. :0.000 Min. :0.000 Min. :0.000 Min. :1.000 1 : 779
    > 1st Qu.:0.000 1st Qu.:0.000 1st Qu.:0.119 1st Qu.:1.000 2 :1335
    > Median :0.000 Median :1.000 Median :0.272 Median :1.000 3 : 989
    > Mean :0.399 Mean :0.601 Mean :0.297 Mean :1.578 NA's:5009
    > 3rd Qu.:1.000 3rd Qu.:1.000 3rd Qu.:0.440 3rd Qu.:2.000
    > Max. :1.000 Max. :1.000 Max. :0.993 Max. :3.000
    > NA's :5009 NA's :5009 NA's :5009 NA's :5009
    146c138
    < 1.00 2.75 4.50 4.75 6.50 9.00 1.00
    ---
    > 1.00 2.75 4.50 4.75 6.50 9.00 1
    Running 'pass1.R'
    Comparing 'pass1.Rout' to 'pass1.Rout.save' ...65c65
    < NA's : 2.000
    ---
    > NA's :2
    226c226
    < NA's : 2.000 NA's : 1
    ---
    > NA's :2 NA's : 1
    260c260
    < NA's : 2.000 NA's : 1
    ---
    > NA's :2 NA's : 1
    Running 'point.in.polygon.R'
    Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK
    Running 'sel.R'
    Comparing 'sel.Rout' to 'sel.Rout.save' ... OK
    Running 'sp1.R'
    Comparing 'sp1.Rout' to 'sp1.Rout.save' ...79c79
    < NA's : 2.000
    ---
    > NA's :2
    Running 'spDists.R'
    Comparing 'spDists.Rout' to 'spDists.Rout.save' ...15c15
    < [1] 1.774598e-10
    ---
    > [1] 0
    18c18
    < -9.095e-13 0.000e+00 0.000e+00 3.690e-16 0.000e+00 9.095e-13
    ---
    > 0 0 0 0 0 0
    22c22
    < [1] 1.774598e-10
    ---
    > [1] 0
    25c25
    < -9.095e-13 0.000e+00 0.000e+00 3.690e-16 0.000e+00 9.095e-13
    ---
    > 0 0 0 0 0 0
    Running 'spplot.R'
    Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK
    Running 'zerodist.R'
    Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ...52c52
    < NA's : 2.000
    ---
    > NA's :2
    87c87
    < NA's : 2.000
    ---
    > NA's :2
    ** running tests for arch 'x64' OK
    Running 'base.R'
    Comparing 'base.Rout' to 'base.Rout.save' ... OK
    Running 'fail1.R'
    Comparing 'fail1.Rout' to 'fail1.Rout.save' ... OK
    Running 'grid.R'
    Comparing 'grid.Rout' to 'grid.Rout.save' ...28,43c28,35
    < part.a part.b dist soil
    < Min. : 0.0000 Min. : 0.0000 Min. : 0.0000 Min. : 1.000
    < 1st Qu.: 0.0000 1st Qu.: 0.0000 1st Qu.: 0.1193 1st Qu.: 1.000
    < Median : 0.0000 Median : 1.0000 Median : 0.2715 Median : 1.000
    < Mean : 0.3986 Mean : 0.6014 Mean : 0.2971 Mean : 1.578
    < 3rd Qu.: 1.0000 3rd Qu.: 1.0000 3rd Qu.: 0.4402 3rd Qu.: 2.000
    < Max. : 1.0000 Max. : 1.0000 Max. : 0.9926 Max. : 3.000
    < NA's :5009.0000 NA's :5009.0000 NA's :5009.0000 NA's :5009.000
    < ffreq
    < 1 : 779
    < 2 :1335
    < 3 : 989
    < NA's:5009
    <
    <
    <
    ---
    > part.a part.b dist soil ffreq
    > Min. :0.000 Min. :0.000 Min. :0.000 Min. :1.000 1 : 779
    > 1st Qu.:0.000 1st Qu.:0.000 1st Qu.:0.119 1st Qu.:1.000 2 :1335
    > Median :0.000 Median :1.000 Median :0.272 Median :1.000 3 : 989
    > Mean :0.399 Mean :0.601 Mean :0.297 Mean :1.578 NA's:5009
    > 3rd Qu.:1.000 3rd Qu.:1.000 3rd Qu.:0.440 3rd Qu.:2.000
    > Max. :1.000 Max. :1.000 Max. :0.993 Max. :3.000
    > NA's :5009 NA's :5009 NA's :5009 NA's :5009
    146c138
    < 1.00 2.75 4.50 4.75 6.50 9.00 1.00
    ---
    > 1.00 2.75 4.50 4.75 6.50 9.00 1
    Running 'pass1.R'
    Comparing 'pass1.Rout' to 'pass1.Rout.save' ...65c65
    < NA's : 2.000
    ---
    > NA's :2
    226c226
    < NA's : 2.000 NA's : 1
    ---
    > NA's :2 NA's : 1
    260c260
    < NA's : 2.000 NA's : 1
    ---
    > NA's :2 NA's : 1
    Running 'point.in.polygon.R'
    Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK
    Running 'sel.R'
    Comparing 'sel.Rout' to 'sel.Rout.save' ... OK
    Running 'sp1.R'
    Comparing 'sp1.Rout' to 'sp1.Rout.save' ...79c79
    < NA's : 2.000
    ---
    > NA's :2
    Running 'spDists.R'
    Comparing 'spDists.Rout' to 'spDists.Rout.save' ... OK
    Running 'spplot.R'
    Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK
    Running 'zerodist.R'
    Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ...52c52
    < NA's : 2.000
    ---
    > NA's :2
    87c87
    < NA's : 2.000
    ---
    > NA's :2
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... OK
  • checking PDF version of manual ... OK