• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'rggobi/DESCRIPTION' ... OK
• this is package 'rggobi' version '2.1.17'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'rggobi' can be installed ... OK
• checking installed package size ... OK
  NB: this package is only installed for sub-architecture 'i386'
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  edges<-.GGobi: no visible global function definition for 'nodes'
  edges<-.GGobi: no visible global function definition for 'edgeMatrix'
  edges<-.GGobiData: no visible global function definition for 'nodes'
  edges<-.GGobiData: no visible global function definition for
  'edgeMatrix'
  ggobi_pcp: no visible binding for global variable 'CASEID'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... WARNING
  Undocumented S4 classes:
  'GGobiData'
  All user-level objects in a package (including S4 classes and methods)
  should have documentation entries.
  See the chapter 'Writing R documentation files' in the 'Writing R
  Extensions' manual.
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object '"as.data.frame.GGobiData"':
  'as.data.frame.GGobiData'
  
  S3 methods shown with full name in documentation object 'close.GGobi':
  'close.GGobi'
  
  S3 methods shown with full name in documentation object 'close.GGobiDisplay':
  'close.GGobiDisplay'
  
  S3 methods shown with full name in documentation object 'dataset.GGobiDisplay':
  'dataset.GGobiDisplay'
  
  S3 methods shown with full name in documentation object 'dataset.numeric':
  'dataset.numeric'
  
  S3 methods shown with full name in documentation object 'dim.GGobiData':
  'dim.GGobiData'
  
  S3 methods shown with full name in documentation object '"dimnames<-.GGobiData"':
  'dimnames<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'dimnames.GGobiData':
  'dimnames.GGobiData'
  
  S3 methods shown with full name in documentation object 'display.GGobiData':
  'display.GGobiData'
  
  S3 methods shown with full name in documentation object 'displays.GGobi':
  'displays.GGobi'
  
  S3 methods shown with full name in documentation object '"edges<-.GGobi"':
  'edges<-.GGobi'
  
  S3 methods shown with full name in documentation object '"edges<-.GGobiData"':
  'edges<-.GGobiData'
  
  S3 methods shown with full name in documentation object '"edges<-.GGobiDisplay"':
  'edges<-.GGobiDisplay'
  
  S3 methods shown with full name in documentation object '"excluded<-.GGobiData"':
  'excluded<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'excluded.GGobiData':
  'excluded.GGobiData'
  
  S3 methods shown with full name in documentation object '"[.GGobi"':
  '[.GGobi'
  
  S3 methods shown with full name in documentation object '"[.GGobiData"':
  '[.GGobiData'
  
  S3 methods shown with full name in documentation object 'ggobi.GGobiDisplay':
  'ggobi.GGobiDisplay'
  
  S3 methods shown with full name in documentation object 'ggobi.default':
  'ggobi.default'
  
  S3 methods shown with full name in documentation object '"glyph_colour<-.GGobiData"':
  'glyph_colour<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'glyph_colour.GGobiData':
  'glyph_colour.GGobiData'
  
  S3 methods shown with full name in documentation object '"glyph_size<-.GGobiData"':
  'glyph_size<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'glyph_size.GGobiData':
  'glyph_size.GGobiData'
  
  S3 methods shown with full name in documentation object '"glyph_type<-.GGobiData"':
  'glyph_type<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'glyph_type.GGobiData':
  'glyph_type.GGobiData'
  
  S3 methods shown with full name in documentation object '"ids<-.GGobiData"':
  'ids<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'ids.GGobiData':
  'ids.GGobiData'
  
  S3 methods shown with full name in documentation object 'length.GGobiDisplay':
  'length.GGobiDisplay'
  
  S3 methods shown with full name in documentation object '"names<-.GGobiData"':
  'names<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'names.GGobi':
  'names.GGobi'
  
  S3 methods shown with full name in documentation object 'names.GGobiData':
  'names.GGobiData'
  
  S3 methods shown with full name in documentation object 'print.GGobi':
  'print.GGobi'
  
  S3 methods shown with full name in documentation object 'print.GGobiData':
  'print.GGobiData'
  
  S3 methods shown with full name in documentation object 'print.GGobiDisplay':
  'print.GGobiDisplay'
  
  S3 methods shown with full name in documentation object 'selected.GGobiData':
  'selected.GGobiData'
  
  S3 methods shown with full name in documentation object '"[<-.GGobi"':
  '[<-.GGobi'
  
  S3 methods shown with full name in documentation object '"[<-.GGobiData"':
  '[<-.GGobiData'
  
  S3 methods shown with full name in documentation object '"shadowed<-.GGobiData"':
  'shadowed<-.GGobiData'
  
  S3 methods shown with full name in documentation object 'shadowed.GGobiData':
  'shadowed.GGobiData'
  
  S3 methods shown with full name in documentation object 'summary.GGobi':
  'summary.GGobi'
  
  S3 methods shown with full name in documentation object 'summary.GGobiData':
  'summary.GGobiData'
  
  S3 methods shown with full name in documentation object '"variables<-.GGobiDisplay"':
  'variables<-.GGobiDisplay'
  
  S3 methods shown with full name in documentation object 'variables.GGobiDisplay':
  'variables.GGobiDisplay'
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in the 'Writing R
  Extensions' manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... NOTE
  'data(package=)' call not declared from: 'nlme'
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning, see
  'd:/Rcompile/CRANpkg/local/2.14/rggobi.Rcheck/00check.log'
  for details