- using R version 2.14.2 (2012-02-29)
- using platform: i386-pc-mingw32 (32-bit)
- using session charset: ISO8859-1
- checking for file 'proxy/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'proxy' version '0.4-7'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'proxy' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'apply.R'
Comparing 'apply.Rout' to 'apply.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
24,28c26,30
< [1,] 0.4595829 0.246283120 0.6662151 0.2658000
< [2,] 0.8390691 0.002929016 0.3449861 0.4751930
< [3,] 0.0377036 0.300615279 0.1399626 0.5143060
< [4,] 0.7621676 0.963274350 0.4358104 0.7934745
< [5,] 0.1211588 0.452265898 0.8005272 0.3062947
---
> [1,] 0.45958286 0.246283120 0.6662151 0.2658000
> [2,] 0.83906910 0.002929016 0.3449861 0.4751930
> [3,] 0.03770360 0.300615279 0.1399626 0.5143060
> [4,] 0.76216756 0.963274350 0.4358104 0.7934745
> [5,] 0.12115883 0.452265898 0.8005272 0.3062947
104c106
< [1] 0.0377036 0.3006153 0.1399626 0.5143060
---
> [1] 0.03770360 0.30061528 0.13996262 0.51430601
252a255,257
> Warning message:
> longer object length
> is not a multiple of shorter object length in: nax != nay
Running 'distance.R'
Comparing 'distance.Rout' to 'distance.Rout.save' ...12d11
< The following object(s) are masked from 'package:stats':
14c13,16
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
30,34c32,36
< A 0.0000000 0.000000000 0.0000000 0.0000000
< B 0.8390691 0.002929016 0.3449861 0.4751930
< C 0.0377036 0.300615279 0.1399626 0.5143060
< D 0.7621676 0.963274350 0.4358104 0.7934745
< E 0.1211588 0.452265898 0.8005272 0.3062947
---
> A 0.00000000 0.000000000 0.0000000 0.0000000
> B 0.83906910 0.002929016 0.3449861 0.4751930
> C 0.03770360 0.300615279 0.1399626 0.5143060
> D 0.76216756 0.963274350 0.4358104 0.7934745
> E 0.12115883 0.452265898 0.8005272 0.3062947
37,41c39,43
< A 0.4595829 0.2462831 0.6662151 0.2658000
< B 0.0000000 0.0000000 0.0000000 0.0000000
< C 0.0377036 0.3006153 0.1399626 0.5143060
< D 0.7621676 0.9632744 0.4358104 0.7934745
< E 0.1211588 0.4522659 0.8005272 0.3062947
---
> A 0.45958286 0.2462831 0.6662151 0.2658000
> B 0.00000000 0.0000000 0.0000000 0.0000000
> C 0.03770360 0.3006153 0.1399626 0.5143060
> D 0.76216756 0.9632744 0.4358104 0.7934745
> E 0.12115883 0.4522659 0.8005272 0.3062947
Running 'distcalls.R'
Comparing 'distcalls.Rout' to 'distcalls.Rout.save' ...11d10
< The following object(s) are masked from 'package:stats':
13c12,15
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
40d41
< Fager: OK.
42c43
< simple matching: OK.
---
> Simple Matching: OK.
44d44
< Faith: OK.
53c53
< Simpson: OK.
---
> Simson: OK.
59,60c59,60
< Chi-squared: OK.
< Phi-squared: OK.
---
> Chi-Squared: OK.
> PhiSquared: OK.
71c71
< divergence: OK.
---
> Divergence: OK.
75,79d74
< Podani: OK.
< Chord: OK.
< Geodesic: OK.
< Whittaker: OK.
< Hellinger: OK.
115d109
< Fager: OK.
117c111
< simple matching: OK.
---
> Simple Matching: OK.
119d112
< Faith: OK.
128c121
< Simpson: OK.
---
> Simson: OK.
134,135c127,128
< Chi-squared: OK.
< Phi-squared: OK.
---
> Chi-Squared: OK.
> PhiSquared: OK.
146c139
< divergence: OK.
---
> Divergence: OK.
150,154d142
< Podani: OK.
< Chord: OK.
< Geodesic: OK.
< Whittaker: OK.
< Hellinger: OK.
166a155,167
>
> Attaching package: 'cba'
>
>
> The following object(s) are masked from package:proxy :
>
> col.dist,
> colMeans.dist,
> colSums.dist,
> row.dist,
> rowMeans.dist,
> rowSums.dist
>
Running 'registry.R'
Comparing 'registry.Rout' to 'registry.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
29d30
< type character
30a32
> type character
36d37
< type logical
37a39
> type logical
43d44
< type character
44a46
> type character
50d51
< type NA
51a53
> type NA
83d84
< type NA
84a86
> type NA
100d101
< type NA
101a103
> type NA
Running 'util.R'
Comparing 'util.Rout' to 'util.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
20,23c22,25
< 2 0.8390691
< 3 0.0377036 0.3006153
< 4 0.7621676 0.9632744 0.4358104
< 5 0.1211588 0.4522659 0.8005272 0.3062947
---
> 2 0.83906910
> 3 0.03770360 0.30061528
> 4 0.76216756 0.96327435 0.43581036
> 5 0.12115883 0.45226590 0.80052719 0.30629473
58,59c60,61
< 2 0.0377036
< 3 0.1211588 0.8005272
---
> 2 0.03770360
> 3 0.12115883 0.80052719
66,67c68,69
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
119,120c121,122
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
123,124c125,126
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
** running tests for arch 'x64' OK
Running 'apply.R'
Comparing 'apply.Rout' to 'apply.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
24,28c26,30
< [1,] 0.4595829 0.246283120 0.6662151 0.2658000
< [2,] 0.8390691 0.002929016 0.3449861 0.4751930
< [3,] 0.0377036 0.300615279 0.1399626 0.5143060
< [4,] 0.7621676 0.963274350 0.4358104 0.7934745
< [5,] 0.1211588 0.452265898 0.8005272 0.3062947
---
> [1,] 0.45958286 0.246283120 0.6662151 0.2658000
> [2,] 0.83906910 0.002929016 0.3449861 0.4751930
> [3,] 0.03770360 0.300615279 0.1399626 0.5143060
> [4,] 0.76216756 0.963274350 0.4358104 0.7934745
> [5,] 0.12115883 0.452265898 0.8005272 0.3062947
104c106
< [1] 0.0377036 0.3006153 0.1399626 0.5143060
---
> [1] 0.03770360 0.30061528 0.13996262 0.51430601
252a255,257
> Warning message:
> longer object length
> is not a multiple of shorter object length in: nax != nay
Running 'distance.R'
Comparing 'distance.Rout' to 'distance.Rout.save' ...12d11
< The following object(s) are masked from 'package:stats':
14c13,16
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
30,34c32,36
< A 0.0000000 0.000000000 0.0000000 0.0000000
< B 0.8390691 0.002929016 0.3449861 0.4751930
< C 0.0377036 0.300615279 0.1399626 0.5143060
< D 0.7621676 0.963274350 0.4358104 0.7934745
< E 0.1211588 0.452265898 0.8005272 0.3062947
---
> A 0.00000000 0.000000000 0.0000000 0.0000000
> B 0.83906910 0.002929016 0.3449861 0.4751930
> C 0.03770360 0.300615279 0.1399626 0.5143060
> D 0.76216756 0.963274350 0.4358104 0.7934745
> E 0.12115883 0.452265898 0.8005272 0.3062947
37,41c39,43
< A 0.4595829 0.2462831 0.6662151 0.2658000
< B 0.0000000 0.0000000 0.0000000 0.0000000
< C 0.0377036 0.3006153 0.1399626 0.5143060
< D 0.7621676 0.9632744 0.4358104 0.7934745
< E 0.1211588 0.4522659 0.8005272 0.3062947
---
> A 0.45958286 0.2462831 0.6662151 0.2658000
> B 0.00000000 0.0000000 0.0000000 0.0000000
> C 0.03770360 0.3006153 0.1399626 0.5143060
> D 0.76216756 0.9632744 0.4358104 0.7934745
> E 0.12115883 0.4522659 0.8005272 0.3062947
Running 'distcalls.R'
Comparing 'distcalls.Rout' to 'distcalls.Rout.save' ...11d10
< The following object(s) are masked from 'package:stats':
13c12,15
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
40d41
< Fager: OK.
42c43
< simple matching: OK.
---
> Simple Matching: OK.
44d44
< Faith: OK.
53c53
< Simpson: OK.
---
> Simson: OK.
59,60c59,60
< Chi-squared: OK.
< Phi-squared: OK.
---
> Chi-Squared: OK.
> PhiSquared: OK.
71c71
< divergence: OK.
---
> Divergence: OK.
75,79d74
< Podani: OK.
< Chord: OK.
< Geodesic: OK.
< Whittaker: OK.
< Hellinger: OK.
103c98
< There were 38 warnings (use warnings() to see them)
---
> There were 22 warnings (use warnings() to see them)
105c100
< There were 50 or more warnings (use warnings() to see the first 50)
---
> There were 44 warnings (use warnings() to see them)
115d109
< Fager: OK.
117c111
< simple matching: OK.
---
> Simple Matching: OK.
119d112
< Faith: OK.
128c121
< Simpson: OK.
---
> Simson: OK.
134,135c127,128
< Chi-squared: OK.
< Phi-squared: OK.
---
> Chi-Squared: OK.
> PhiSquared: OK.
146c139
< divergence: OK.
---
> Divergence: OK.
150,154d142
< Podani: OK.
< Chord: OK.
< Geodesic: OK.
< Whittaker: OK.
< Hellinger: OK.
166a155,167
>
> Attaching package: 'cba'
>
>
> The following object(s) are masked from package:proxy :
>
> col.dist,
> colMeans.dist,
> colSums.dist,
> row.dist,
> rowMeans.dist,
> rowSums.dist
>
Running 'registry.R'
Comparing 'registry.Rout' to 'registry.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
29d30
< type character
30a32
> type character
36d37
< type logical
37a39
> type logical
43d44
< type character
44a46
> type character
50d51
< type NA
51a53
> type NA
83d84
< type NA
84a86
> type NA
100d101
< type NA
101a103
> type NA
Running 'util.R'
Comparing 'util.Rout' to 'util.Rout.save' ...10d9
< The following object(s) are masked from 'package:stats':
12c11,14
< as.dist, dist
---
> The following object(s) are masked from package:stats :
>
> as.dist,
> dist
20,23c22,25
< 2 0.8390691
< 3 0.0377036 0.3006153
< 4 0.7621676 0.9632744 0.4358104
< 5 0.1211588 0.4522659 0.8005272 0.3062947
---
> 2 0.83906910
> 3 0.03770360 0.30061528
> 4 0.76216756 0.96327435 0.43581036
> 5 0.12115883 0.45226590 0.80052719 0.30629473
58,59c60,61
< 2 0.0377036
< 3 0.1211588 0.8005272
---
> 2 0.03770360
> 3 0.12115883 0.80052719
66,67c68,69
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
119,120c121,122
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
123,124c125,126
< C 0.0377036
< E 0.1211588 0.8005272
---
> C 0.03770360
> E 0.12115883 0.80052719
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK