• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'phylosim/DESCRIPTION' ... OK
• this is package 'phylosim' version '0.17'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'multicore'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'phylosim' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  <use PhyloSim-048.pdf> [10] <PhyloSim-055.pdf, id=100, 13008.6pt x 2890.8pt>
  <use PhyloSim-055.pdf> [11 <d:/RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign
  _test/phylosim/inst/doc/PhyloSim-048.pdf>]
  <PhyloSim-064.pdf, id=111, 433.62pt x 433.62pt> <use PhyloSim-064.pdf> [12 <d:/
  RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSi
  m-055.pdf>] <PhyloSim-067.pdf, id=122, 13008.6pt x 5781.6pt>
  <use PhyloSim-067.pdf> [13 <d:/RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign
  _test/phylosim/inst/doc/PhyloSim-064.pdf>] [14 <d:/RCompile/CRANpkg/local/2.14/
  phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-067.pdf>]
  <PhyloSim-076.pdf, id=145, 13008.6pt x 2890.8pt> <use PhyloSim-076.pdf>
  [15 <d:/RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign_test/phylosim/inst/doc
  /PhyloSim-076.pdf>] <PhyloSim-083.pdf, id=156, 433.62pt x 433.62pt>
  <use PhyloSim-083.pdf> [16] <PhyloSim-086.pdf, id=161, 13008.6pt x 2890.8pt>
  <use PhyloSim-086.pdf> [17 <d:/RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign
  _test/phylosim/inst/doc/PhyloSim-083.pdf>] [18 <d:/RCompile/CRANpkg/local/2.14/
  phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-086.pdf>] [19]
  !pdfTeX error: d:\compiler\texmf\miktex\bin\pdflatex.exe (file d:/RCompile/CRAN
  pkg/local/2.14/phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-096.pdf): P
  DF inclusion: required page does not exist <0>
  ==> Fatal error occurred, no output PDF file produced!
  make[1]: *** [all] Error 1
  make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.14/phylosim.Rcheck/vign_test/phylosim/inst/doc'
  Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.14/phylosim.Rcheck/vign_test/phylosim") :
  running 'make' failed
  Execution halted
  
• checking PDF version of manual ... OK