Check results for 'multcomp'

using R version 2.15.3 (2013-03-01)
using platform: i386-w64-mingw32 (32-bit)
using session charset: ISO8859-1
checking for file 'multcomp/DESCRIPTION' ... OK
this is package 'multcomp' version '1.2-18'
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking whether package 'multcomp' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking sizes of PDF files under 'inst/doc' ... OK
checking installed files from 'inst/doc' ... OK
checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'multcomp-Ex_i386.Rout' to 'multcomp-Ex.Rout.save' ...
3c3
< > assign(".oldSearch", search(), pos = 'CheckExEnv')
---
> > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
279c279
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
447c447
< Quantile = 3.0633
---
> Quantile = 3.0638
453,462c453,462
< B - A == 0 -2.1333 -4.7921 0.5255
< C - A == 0 3.6000 0.9412 6.2588
< D - A == 0 2.2000 -0.4588 4.8588
< E - A == 0 -4.3333 -6.9921 -1.6745
< C - B == 0 5.7333 3.0745 8.3921
< D - B == 0 4.3333 1.6745 6.9921
< E - B == 0 -2.2000 -4.8588 0.4588
< D - C == 0 -1.4000 -4.0588 1.2588
< E - C == 0 -7.9333 -10.5921 -5.2745
< E - D == 0 -6.5333 -9.1921 -3.8745
---
> B - A == 0 -2.1333 -4.7925 0.5259
> C - A == 0 3.6000 0.9408 6.2592
> D - A == 0 2.2000 -0.4592 4.8592
> E - A == 0 -4.3333 -6.9925 -1.6741
> C - B == 0 5.7333 3.0741 8.3925
> D - B == 0 4.3333 1.6741 6.9925
> E - B == 0 -2.2000 -4.8592 0.4592
> D - C == 0 -1.4000 -4.0592 1.2592
> E - C == 0 -7.9333 -10.5925 -5.2741
> E - D == 0 -6.5333 -9.1925 -3.8741
507c507
< D - B == 0 4.3333 0.8679 4.993 0.000398 ***
---
> D - B == 0 4.3333 0.8679 4.993 0.000531 ***
528c528
< C - A == 0 3.6000 0.8679 4.148 0.00293 **
---
> C - A == 0 3.6000 0.8679 4.148 0.00275 **
576c576
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
594,608c594,608
< PE4 - PE3 == 0 -0.012820 -0.114111 0.088472
< PE5 - PE3 == 0 -0.084398 -0.182358 0.013561
< PE6 - PE3 == 0 0.019286 -0.084213 0.122784
< PE7 - PE3 == 0 -0.010048 -0.120046 0.099951
< PE9 - PE3 == 0 0.075536 -0.028030 0.179102
< PE5 - PE4 == 0 -0.071579 -0.128780 -0.014378
< PE6 - PE4 == 0 0.032105 -0.034135 0.098346
< PE7 - PE4 == 0 0.002772 -0.073225 0.078769
< PE9 - PE4 == 0 0.088355 0.022009 0.154701
< PE6 - PE5 == 0 0.103684 0.042659 0.164709
< PE7 - PE5 == 0 0.074351 0.002854 0.145848
< PE9 - PE5 == 0 0.159934 0.098795 0.221073
< PE7 - PE6 == 0 -0.029333 -0.108248 0.049582
< PE9 - PE6 == 0 0.056250 -0.013419 0.125919
< PE9 - PE7 == 0 0.085583 0.006580 0.164587
---
> PE4 - PE3 == 0 -0.012820 -0.114108 0.088468
> PE5 - PE3 == 0 -0.084398 -0.182355 0.013558
> PE6 - PE3 == 0 0.019286 -0.084210 0.122781
> PE7 - PE3 == 0 -0.010048 -0.120043 0.099948
> PE9 - PE3 == 0 0.075536 -0.028027 0.179098
> PE5 - PE4 == 0 -0.071579 -0.128779 -0.014379
> PE6 - PE4 == 0 0.032105 -0.034133 0.098344
> PE7 - PE4 == 0 0.002772 -0.073223 0.078767
> PE9 - PE4 == 0 0.088355 0.022012 0.154699
> PE6 - PE5 == 0 0.103684 0.042661 0.164707
> PE7 - PE5 == 0 0.074351 0.002856 0.145845
> PE9 - PE5 == 0 0.159934 0.098797 0.221071
> PE7 - PE6 == 0 -0.029333 -0.108246 0.049579
> PE9 - PE6 == 0 0.056250 -0.013417 0.125917
> PE9 - PE7 == 0 0.085583 0.006582 0.164584
940,941c940,941
< otrend >= 0 -3.4821 2.0867 -1.669 0.2182
< atrend >= 0 -314.7324 408.9901 -0.770 0.6621
---
> otrend >= 0 -3.4821 2.0867 -1.669 0.2185
> atrend >= 0 -314.7324 408.9901 -0.770 0.6625
1134,1136c1134,1136
< V2 - V1 >= 0 -2.13330 -Inf 0.82293
< V3 - V1 >= 0 -7.46670 -Inf -4.51047
< V4 - V1 >= 0 -1.66670 -Inf -0.03581
---
> V2 - V1 >= 0 -2.13330 -Inf 0.82288
> V3 - V1 >= 0 -7.46670 -Inf -4.51052
> V4 - V1 >= 0 -1.66670 -Inf -0.03584
1243c1243
< The following object(s) are masked from 'package:nlme':
---
> The following object is masked from 'package:nlme':
1247c1247
< The following object(s) are masked from 'package:stats':
---
> The following object is masked from 'package:stats':
1296,1298c1296,1298
< b1 - b0 >= 0 -2.13333 -Inf 0.82290
< b2 - b0 >= 0 -7.46667 -Inf -4.51043
< b3 - b0 >= 0 -1.66667 -Inf -0.03578
---
> b1 - b0 >= 0 -2.13333 -Inf 0.82285
> b2 - b0 >= 0 -7.46667 -Inf -4.51048
> b3 - b0 >= 0 -1.66667 -Inf -0.03581
1314c1314
< Quantile = 1.8428
---
> Quantile = 1.8429
1320,1322c1320,1322
< b1 - b0 >= 0 -2.13333 -Inf 0.82217
< b2 - b0 >= 0 -7.46667 -Inf -4.51117
< b3 - b0 >= 0 -1.66667 -Inf -0.03618
---
> b1 - b0 >= 0 -2.13333 -Inf 0.82222
> b2 - b0 >= 0 -7.46667 -Inf -4.51112
> b3 - b0 >= 0 -1.66667 -Inf -0.03616
1511c1511,1512
< > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
---
> > options(digits = 7L)
> > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
OK
** running examples for arch 'x64' ... OK
** checking differences from 'multcomp-Ex_x64.Rout' to 'multcomp-Ex.Rout.save' ...
3c3
< > assign(".oldSearch", search(), pos = 'CheckExEnv')
---
> > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
279c279
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
576c576
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
1243c1243
< The following object(s) are masked from 'package:nlme':
---
> The following object is masked from 'package:nlme':
1247c1247
< The following object(s) are masked from 'package:stats':
---
> The following object is masked from 'package:stats':
1511c1511,1512
< > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
---
> > options(digits = 7L)
> > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
OK
checking for unstated dependencies in tests ... OK
checking tests ...
** running tests for arch 'i386' OK
Running 'bugfix.R'
Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ...124,125c124,125
< [1] 1.380852e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01
< [6] 9.917862e-04 6.540450e-10 2.512705e-01 3.447725e-06 3.042641e-03
---
> [1] 1.380883e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01
> [6] 9.917862e-04 6.540452e-10 2.512705e-01 3.447725e-06 3.042641e-03
127c127
< [1] 0.0001321268
---
> [1] 0.0001910665
163c163
< 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
---
> 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
181c181
< 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
---
> 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
202c202
< 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, :
---
> 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, :
Running 'regtest-Tukey.R'
Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK
Running 'regtest-anova.R'
Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ...50c50
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
Running 'regtest-interface.R'
Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK
Running 'regtest-lme.R'
Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ...14c14
< The following object(s) are masked from 'package:stats':
---
> The following object is masked from 'package:stats':
63c63
< The following object(s) are masked from 'package:lme4':
---
> The following object is masked from 'package:lme4':
** running tests for arch 'x64' OK
Running 'bugfix.R'
Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ... OK
Running 'regtest-Tukey.R'
Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK
Running 'regtest-anova.R'
Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ...50c50
< The following object(s) are masked from 'package:base':
---
> The following object is masked from 'package:base':
Running 'regtest-interface.R'
Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK
Running 'regtest-lme.R'
Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ...14c14
< The following object(s) are masked from 'package:stats':
---
> The following object is masked from 'package:stats':
63c63
< The following object(s) are masked from 'package:lme4':
---
> The following object is masked from 'package:lme4':
checking for unstated dependencies in vignettes ... OK
checking package vignettes in 'inst/doc' ... WARNING
Unused files in 'inst/doc' which are pointless or misleading
as they will be re-created from the vignettes:
chfls1.R
generalsiminf.R
multcomp-examples.R
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... OK
checking PDF version of manual ... OK
WARNING: There was 1 warning.
See
'd:/Rcompile/CRANpkg/local/2.15/multcomp.Rcheck/00check.log'
for details.