Check results for 'multcomp'

using R version 2.14.2 (2012-02-29)
using platform: i386-pc-mingw32 (32-bit)
using session charset: ISO8859-1
checking for file 'multcomp/DESCRIPTION' ... OK
this is package 'multcomp' version '1.2-12'
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking whether package 'multcomp' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking sizes of PDF files under 'inst/doc' ... OK
checking examples ... OK
checking differences from 'multcomp-Ex.Rout' to 'multcomp-Ex.Rout.save' ...
453c453
< Quantile = 3.0633
---
> Quantile = 3.0638
459,468c459,468
< B - A == 0 -2.1333 -4.7921 0.5255
< C - A == 0 3.6000 0.9412 6.2588
< D - A == 0 2.2000 -0.4588 4.8588
< E - A == 0 -4.3333 -6.9921 -1.6745
< C - B == 0 5.7333 3.0745 8.3921
< D - B == 0 4.3333 1.6745 6.9921
< E - B == 0 -2.2000 -4.8588 0.4588
< D - C == 0 -1.4000 -4.0588 1.2588
< E - C == 0 -7.9333 -10.5921 -5.2745
< E - D == 0 -6.5333 -9.1921 -3.8745
---
> B - A == 0 -2.1333 -4.7925 0.5259
> C - A == 0 3.6000 0.9408 6.2592
> D - A == 0 2.2000 -0.4592 4.8592
> E - A == 0 -4.3333 -6.9925 -1.6741
> C - B == 0 5.7333 3.0741 8.3925
> D - B == 0 4.3333 1.6741 6.9925
> E - B == 0 -2.2000 -4.8592 0.4592
> D - C == 0 -1.4000 -4.0592 1.2592
> E - C == 0 -7.9333 -10.5925 -5.2741
> E - D == 0 -6.5333 -9.1925 -3.8741
534c534
< C - A == 0 3.6000 0.8679 4.148 0.00293 **
---
> C - A == 0 3.6000 0.8679 4.148 0.00275 **
600,614c600,614
< PE4 - PE3 == 0 -0.012820 -0.114111 0.088472
< PE5 - PE3 == 0 -0.084398 -0.182358 0.013561
< PE6 - PE3 == 0 0.019286 -0.084213 0.122784
< PE7 - PE3 == 0 -0.010048 -0.120046 0.099951
< PE9 - PE3 == 0 0.075536 -0.028030 0.179102
< PE5 - PE4 == 0 -0.071579 -0.128780 -0.014378
< PE6 - PE4 == 0 0.032105 -0.034135 0.098346
< PE7 - PE4 == 0 0.002772 -0.073225 0.078769
< PE9 - PE4 == 0 0.088355 0.022009 0.154701
< PE6 - PE5 == 0 0.103684 0.042659 0.164709
< PE7 - PE5 == 0 0.074351 0.002854 0.145848
< PE9 - PE5 == 0 0.159934 0.098795 0.221073
< PE7 - PE6 == 0 -0.029333 -0.108248 0.049582
< PE9 - PE6 == 0 0.056250 -0.013419 0.125919
< PE9 - PE7 == 0 0.085583 0.006580 0.164587
---
> PE4 - PE3 == 0 -0.012820 -0.114108 0.088468
> PE5 - PE3 == 0 -0.084398 -0.182355 0.013558
> PE6 - PE3 == 0 0.019286 -0.084210 0.122781
> PE7 - PE3 == 0 -0.010048 -0.120043 0.099948
> PE9 - PE3 == 0 0.075536 -0.028027 0.179098
> PE5 - PE4 == 0 -0.071579 -0.128779 -0.014379
> PE6 - PE4 == 0 0.032105 -0.034133 0.098344
> PE7 - PE4 == 0 0.002772 -0.073223 0.078767
> PE9 - PE4 == 0 0.088355 0.022012 0.154699
> PE6 - PE5 == 0 0.103684 0.042661 0.164707
> PE7 - PE5 == 0 0.074351 0.002856 0.145845
> PE9 - PE5 == 0 0.159934 0.098797 0.221071
> PE7 - PE6 == 0 -0.029333 -0.108246 0.049579
> PE9 - PE6 == 0 0.056250 -0.013417 0.125917
> PE9 - PE7 == 0 0.085583 0.006582 0.164584
1140,1142c1140,1142
< V2 - V1 >= 0 -2.13330 -Inf 0.82293
< V3 - V1 >= 0 -7.46670 -Inf -4.51047
< V4 - V1 >= 0 -1.66670 -Inf -0.03581
---
> V2 - V1 >= 0 -2.13330 -Inf 0.82288
> V3 - V1 >= 0 -7.46670 -Inf -4.51052
> V4 - V1 >= 0 -1.66670 -Inf -0.03584
1309,1311c1309,1311
< b1 - b0 >= 0 -2.13333 -Inf 0.82290
< b2 - b0 >= 0 -7.46667 -Inf -4.51043
< b3 - b0 >= 0 -1.66667 -Inf -0.03578
---
> b1 - b0 >= 0 -2.13333 -Inf 0.82285
> b2 - b0 >= 0 -7.46667 -Inf -4.51048
> b3 - b0 >= 0 -1.66667 -Inf -0.03581
1327c1327
< Quantile = 1.8428
---
> Quantile = 1.8429
1333,1335c1333,1335
< b1 - b0 >= 0 -2.13333 -Inf 0.82217
< b2 - b0 >= 0 -7.46667 -Inf -4.51117
< b3 - b0 >= 0 -1.66667 -Inf -0.03618
---
> b1 - b0 >= 0 -2.13333 -Inf 0.82222
> b2 - b0 >= 0 -7.46667 -Inf -4.51112
> b3 - b0 >= 0 -1.66667 -Inf -0.03616
OK
checking for unstated dependencies in tests ... OK
checking tests ... OK
Running 'bugfix.R'
Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ...124c124
< [1] 1.380852e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01
---
> [1] 1.380883e-01 3.524764e-04 9.394029e-07 2.897682e-14 2.050268e-01
127c127
< [1] 0.0001321268
---
> [1] 0.0001910665
Running 'regtest-Tukey.R'
Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK
Running 'regtest-anova.R'
Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ... OK
Running 'regtest-interface.R'
Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK
Running 'regtest-lme.R'
Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in 'inst/doc' ... OK
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... OK
checking PDF version of manual ... OK