• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'mboost/DESCRIPTION' ... OK
• this is package 'mboost' version '2.1-2'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'multicore'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'mboost' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cvrisk: no visible binding for global variable 'mclapply'
  stabsel: no visible binding for global variable 'mclapply'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: 'multicore'
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** checking differences from 'mboost-Ex_i386.Rout' to 'mboost-Ex.Rout.save' ...
  254c254
  < 1.82015201 -0.02260988
  ---
  > 1.82015195 -0.02260988
  260c260
  < [1] 2.052033e-08
  ---
  > [1] 7.571584e-08
  263c263
  < [1] 3.927625e-12
  ---
  > [1] 2.815168e-13
  411c411
  < -0.1298897804 0.0003555854
  ---
  > -0.1298897900 0.0003555856
  429c429
  < -0.1298897992
  ---
  > -0.1298898010
  591c591
  < [1] 2.017941e-12
  ---
  > [1] 2.006573e-11
  1056c1056
  < Degrees of freedom (for mstop = 24): 4.481727
  ---
  > Degrees of freedom (for mstop = 24): 4.481737
  1454,1455c1454,1455
  < [ 1] ...................................... -- risk: 10338.67
  < [ 41] ...................................... -- risk: 10159.83
  ---
  > [ 1] ...................................... -- risk: 10338.66
  > [ 41] ...................................... -- risk: 10159.82
  1479c1479
  < [101] ...................................... -- risk: 9976.165
  ---
  > [101] ...................................... -- risk: 9976.16
  1481c1481
  < Final risk: 9948.544
  ---
  > Final risk: 9948.539
  1487,1520c1487,1520
  < [ 151] ...................................... -- risk: 9843.543
  < [ 191] ...................................... -- risk: 9745.987
  < [ 231] ...................................... -- risk: 9654.787
  < [ 271] ...................................... -- risk: 9569.22
  < [ 311] ...................................... -- risk: 9488.736
  < [ 351] ...................................... -- risk: 9412.891
  < [ 391] ...................................... -- risk: 9341.306
  < [ 431] ...................................... -- risk: 9273.654
  < [ 471] ...................................... -- risk: 9209.644
  < [ 511] ...................................... -- risk: 9149.016
  < [ 551] ...................................... -- risk: 9091.536
  < [ 591] ...................................... -- risk: 9036.992
  < [ 631] ...................................... -- risk: 8985.191
  < [ 671] ...................................... -- risk: 8935.954
  < [ 711] ...................................... -- risk: 8889.12
  < [ 751] ...................................... -- risk: 8844.539
  < [ 791] ...................................... -- risk: 8802.074
  < [ 831] ...................................... -- risk: 8761.595
  < [ 871] ...................................... -- risk: 8722.985
  < [ 911] ...................................... -- risk: 8686.134
  < [ 951] ...................................... -- risk: 8650.941
  < [ 991] ...................................... -- risk: 8617.309
  < [1'031] ...................................... -- risk: 8585.151
  < [1'071] ...................................... -- risk: 8554.384
  < [1'111] ...................................... -- risk: 8524.931
  < [1'151] ...................................... -- risk: 8496.719
  < [1'191] ...................................... -- risk: 8469.681
  < [1'231] ...................................... -- risk: 8443.754
  < [1'271] ...................................... -- risk: 8418.879
  < [1'311] ...................................... -- risk: 8395
  < [1'351] ...................................... -- risk: 8372.064
  < [1'391] ...................................... -- risk: 8350.022
  < [1'431] ...................................... -- risk: 8328.828
  < [1'471] ...................................... -- risk: 8308.44
  ---
  > [ 151] ...................................... -- risk: 9843.537
  > [ 191] ...................................... -- risk: 9745.981
  > [ 231] ...................................... -- risk: 9654.78
  > [ 271] ...................................... -- risk: 9569.212
  > [ 311] ...................................... -- risk: 9488.728
  > [ 351] ...................................... -- risk: 9412.882
  > [ 391] ...................................... -- risk: 9341.297
  > [ 431] ...................................... -- risk: 9273.645
  > [ 471] ...................................... -- risk: 9209.634
  > [ 511] ...................................... -- risk: 9149.006
  > [ 551] ...................................... -- risk: 9091.526
  > [ 591] ...................................... -- risk: 9036.982
  > [ 631] ...................................... -- risk: 8985.181
  > [ 671] ...................................... -- risk: 8935.944
  > [ 711] ...................................... -- risk: 8889.11
  > [ 751] ...................................... -- risk: 8844.529
  > [ 791] ...................................... -- risk: 8802.064
  > [ 831] ...................................... -- risk: 8761.585
  > [ 871] ...................................... -- risk: 8722.975
  > [ 911] ...................................... -- risk: 8686.124
  > [ 951] ...................................... -- risk: 8650.931
  > [ 991] ...................................... -- risk: 8617.299
  > [1'031] ...................................... -- risk: 8585.141
  > [1'071] ...................................... -- risk: 8554.374
  > [1'111] ...................................... -- risk: 8524.921
  > [1'151] ...................................... -- risk: 8496.709
  > [1'191] ...................................... -- risk: 8469.672
  > [1'231] ...................................... -- risk: 8443.745
  > [1'271] ...................................... -- risk: 8418.87
  > [1'311] ...................................... -- risk: 8394.99
  > [1'351] ...................................... -- risk: 8372.054
  > [1'391] ...................................... -- risk: 8350.013
  > [1'431] ...................................... -- risk: 8328.82
  > [1'471] ...................................... -- risk: 8308.431
  1522c1522
  < Final risk: 8289.296
  ---
  > Final risk: 8289.288
  1525c1525
  < -36.995015 -35.596204 -34.085121 -32.349492 -30.277044 -27.732668 -24.322700
  ---
  > -36.995014 -35.596207 -34.085126 -32.349499 -30.277051 -27.732673 -24.322691
  1527c1527
  < -20.863436 -21.899785 -19.121790 -6.090486 2.438404 -4.941579 -7.667458
  ---
  > -20.863408 -21.899798 -19.121835 -6.090471 2.438464 -4.941604 -7.667532
  1529c1529
  < 2.660098 16.107901 12.731691 6.129804 7.150931 15.682223 30.314956
  ---
  > 2.660072 16.107960 12.731713 6.129780 7.150886 15.682172 30.314925
  1531c1531
  < 47.848845 52.733366 46.576832
  ---
  > 47.848885 52.733403 46.576792
  1564,1567c1564,1567
  < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
  < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
  < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
  < [19] 0.39836923 0.42301410 0.36842335 0.22804995
  ---
  > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
  > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
  > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
  > [19] 0.39836988 0.42301499 0.36842422 0.22805053
  1571c1571
  < 3.775258
  ---
  > 3.775259
  1586,1589c1586,1589
  < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
  < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
  < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
  < [19] 0.39836923 0.42301410 0.36842335 0.22804995
  ---
  > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
  > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
  > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
  > [19] 0.39836988 0.42301499 0.36842422 0.22805053
  1593c1593
  < 3.775258
  ---
  > 3.775259
  1611,1614c1611,1614
  < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
  < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
  < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
  < [19] 0.39836923 0.42301410 0.36842335 0.22804995
  ---
  > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
  > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
  > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
  > [19] 0.39836988 0.42301499 0.36842422 0.22805053
  1618c1618
  < 3.775258
  ---
  > 3.775259
  2225c2225
  < 1093.549
  ---
  > 1093.545
  2705c2705
  < 140.4454
  ---
  > 140.4455
  OK
  ** running examples for arch 'x64' ... OK
  ** checking differences from 'mboost-Ex_x64.Rout' to 'mboost-Ex.Rout.save' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'birds_Biometrics.R'
  Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...148c148
  < 0.501901964 -0.001984263
  ---
  > 0.501901966 -0.001984263
  181c181
  < [ 161] ...................................... -- risk: 130.305
  ---
  > [ 161] ...................................... -- risk: 130.3049
  198c198
  < 0.778022842 -0.002811598
  ---
  > 0.778022823 -0.002811598
  202c202
  < 0.59371225 -0.01241289
  ---
  > 0.59371220 -0.01241289
  210c210
  < -1.71264919 0.01108683
  ---
  > -1.71264915 0.01108683
  231c231
  < [ 121] ...................................... -- risk: 460.4985
  ---
  > [ 121] ...................................... -- risk: 460.4984
  234,236c234,236
  < [ 241] ...................................... -- risk: 456.1802
  < [ 281] ...................................... -- risk: 455.1545
  < [ 321] ...................................... -- risk: 454.2507
  ---
  > [ 241] ...................................... -- risk: 456.1801
  > [ 281] ...................................... -- risk: 455.1544
  > [ 321] ...................................... -- risk: 454.2506
  254,265c254,265
  < [ 1] ...................................... -- risk: 502.0303
  < [ 41] ...................................... -- risk: 494.1493
  < [ 81] ...................................... -- risk: 490.0277
  < [ 121] ...................................... -- risk: 487.4496
  < [ 161] ...................................... -- risk: 485.6646
  < [ 201] ...................................... -- risk: 484.3156
  < [ 241] ...................................... -- risk: 483.2211
  < [ 281] ...................................... -- risk: 482.3221
  < [ 321] ...................................... -- risk: 481.5232
  < [ 361] ...................................... -- risk: 480.7767
  < [ 401] ...................................... -- risk: 480.0901
  < [ 441] ...................................... -- risk: 479.5037
  ---
  > [ 1] ...................................... -- risk: 502.0305
  > [ 41] ...................................... -- risk: 494.1495
  > [ 81] ...................................... -- risk: 490.0279
  > [ 121] ...................................... -- risk: 487.4498
  > [ 161] ...................................... -- risk: 485.6648
  > [ 201] ...................................... -- risk: 484.3158
  > [ 241] ...................................... -- risk: 483.2213
  > [ 281] ...................................... -- risk: 482.3224
  > [ 321] ...................................... -- risk: 481.5234
  > [ 361] ...................................... -- risk: 480.7769
  > [ 401] ...................................... -- risk: 480.0903
  > [ 441] ...................................... -- risk: 479.5039
  267c267
  < Final risk: 479.2248
  ---
  > Final risk: 479.225
  Running 'bugfixes.R'
  Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...606,609c606,609
  < Spam version 0.29-1 (2012-05-05) is loaded.
  < Type 'help( Spam)' or 'demo( spam)' for a short introduction
  < and overview of this package.
  < Help for individual functions is also obtained by adding the
  ---
  > Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
  > Type demo( spam) for some demos, help( Spam) for an overview
  > of this package.
  > Help for individual functions is optained by adding the
  621a622,625
  > The following object(s) are masked from 'package:Matrix':
  >
  > norm
  >
  624c628
  < backsolve, forwardsolve
  ---
  > backsolve, forwardsolve, norm
  Running 'regtest-baselearner.R'
  Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ...346,347c346,347
  < [6] -0.220643444 0.154919020 -0.300950310 -0.873054990 -0.519028732
  < [11] 0.320637178 -0.303918058 -0.610811536 -0.686367706 0.342235455
  ---
  > [6] -0.220643444 0.154919020 -0.300950310 -0.873054989 -0.519028732
  > [11] 0.320637178 -0.303918057 -0.610811536 -0.686367706 0.342235455
  363c363
  < [91] 0.429416562 -0.011876975 -0.009186625 -0.599968165 0.438317733
  ---
  > [91] 0.429416562 -0.011876975 -0.009186625 -0.599968164 0.438317732
  440c440
  < [1] -0.9167356
  ---
  > [1] -0.9167353
  Running 'regtest-blackboost.R'
  Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...52,53d51
  < Loaded gbm 1.6.3.2
  <
  55,69c53,67
  < 1 74.4121 nan 0.1000 nan
  < 2 65.6474 nan 0.1000 nan
  < 3 58.7034 nan 0.1000 nan
  < 4 52.6088 nan 0.1000 nan
  < 5 47.5788 nan 0.1000 nan
  < 6 43.1559 nan 0.1000 nan
  < 7 39.3997 nan 0.1000 nan
  < 8 35.9511 nan 0.1000 nan
  < 9 33.1632 nan 0.1000 nan
  < 10 30.6850 nan 0.1000 nan
  < 100 6.8694 nan 0.1000 nan
  < 200 5.0890 nan 0.1000 nan
  < 300 3.9605 nan 0.1000 nan
  < 400 3.2681 nan 0.1000 nan
  < 500 2.7537 nan 0.1000 nan
  ---
  > 1 74.4121 -nan 0.1000 -nan
  > 2 65.6474 -nan 0.1000 -nan
  > 3 58.7034 -nan 0.1000 -nan
  > 4 52.6088 -nan 0.1000 -nan
  > 5 47.5788 -nan 0.1000 -nan
  > 6 43.1559 -nan 0.1000 -nan
  > 7 39.3997 -nan 0.1000 -nan
  > 8 35.9511 -nan 0.1000 -nan
  > 9 33.1632 -nan 0.1000 -nan
  > 10 30.6850 -nan 0.1000 -nan
  > 100 6.8694 -nan 0.1000 -nan
  > 200 5.0890 -nan 0.1000 -nan
  > 300 3.9605 -nan 0.1000 -nan
  > 400 3.2681 -nan 0.1000 -nan
  > 500 2.7537 -nan 0.1000 -nan
  Running 'regtest-family.R'
  Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
  Running 'regtest-gamboost.R'
  Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...36c36
  < [1] 6.625437
  ---
  > [1] 6.625438
  38c38
  < Degrees of freedom (for mstop = 34): 5.056188
  ---
  > Degrees of freedom (for mstop = 34): 5.056199
  208c208
  < [12,] 0.3426994
  ---
  > [12,] 0.3426993
  224,235c224,235
  < [1,] 5.059375e-01 9.071417e-01 0.9992658
  < [2,] 5.963551e-02 6.681175e-01 0.9969654
  < [3,] 4.438008e-03 4.607472e-01 0.9941774
  < [4,] 7.105703e-05 2.550525e-01 0.9897566
  < [5,] 3.469722e-16 6.147551e-03 0.9623562
  < [6,] 1.012072e-27 1.376472e-04 0.9351947
  < [7,] 2.348574e-40 2.145802e-06 0.9063236
  < [8,] 7.383737e-58 6.731226e-09 0.8677950
  < [9,] 1.953648e-78 7.669664e-12 0.8245871
  < [10,] 6.155754e-102 3.335810e-15 0.7778646
  < [11,] 1.619543e-141 7.275178e-21 0.7050833
  < [12,] 4.904272e-189 1.161265e-27 0.6266419
  ---
  > [1,] 5.059374e-01 9.071417e-01 0.9992658
  > [2,] 5.963542e-02 6.681175e-01 0.9969654
  > [3,] 4.437993e-03 4.607471e-01 0.9941774
  > [4,] 7.105658e-05 2.550524e-01 0.9897566
  > [5,] 3.469611e-16 6.147540e-03 0.9623562
  > [6,] 1.012013e-27 1.376467e-04 0.9351947
  > [7,] 2.348370e-40 2.145790e-06 0.9063236
  > [8,] 7.382807e-58 6.731171e-09 0.8677950
  > [9,] 1.953311e-78 7.669578e-12 0.8245871
  > [10,] 6.154361e-102 3.335760e-15 0.7778646
  > [11,] 1.619033e-141 7.275027e-21 0.7050833
  > [12,] 4.902193e-189 1.161233e-27 0.6266419
  Running 'regtest-glmboost.R'
  Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK
  Running 'regtest-hatmatrix.R'
  Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
  ** running tests for arch 'x64' OK
  Running 'birds_Biometrics.R'
  Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...181c181
  < [ 161] ...................................... -- risk: 130.305
  ---
  > [ 161] ...................................... -- risk: 130.3049
  198c198
  < 0.778022842 -0.002811598
  ---
  > 0.778022823 -0.002811598
  202c202
  < 0.59371225 -0.01241289
  ---
  > 0.59371220 -0.01241289
  210c210
  < -1.71264919 0.01108683
  ---
  > -1.71264915 0.01108683
  260c260
  < [ 241] ...................................... -- risk: 483.2214
  ---
  > [ 241] ...................................... -- risk: 483.2213
  263c263
  < [ 361] ...................................... -- risk: 480.777
  ---
  > [ 361] ...................................... -- risk: 480.7769
  Running 'bugfixes.R'
  Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...606,609c606,609
  < Spam version 0.29-1 (2012-05-05) is loaded.
  < Type 'help( Spam)' or 'demo( spam)' for a short introduction
  < and overview of this package.
  < Help for individual functions is also obtained by adding the
  ---
  > Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
  > Type demo( spam) for some demos, help( Spam) for an overview
  > of this package.
  > Help for individual functions is optained by adding the
  621a622,625
  > The following object(s) are masked from 'package:Matrix':
  >
  > norm
  >
  624c628
  < backsolve, forwardsolve
  ---
  > backsolve, forwardsolve, norm
  Running 'regtest-baselearner.R'
  Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ... OK
  Running 'regtest-blackboost.R'
  Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...52,53d51
  < Loaded gbm 1.6.3.2
  <
  55,69c53,67
  < 1 74.4121 nan 0.1000 nan
  < 2 65.6474 nan 0.1000 nan
  < 3 58.7034 nan 0.1000 nan
  < 4 52.6088 nan 0.1000 nan
  < 5 47.5788 nan 0.1000 nan
  < 6 43.1559 nan 0.1000 nan
  < 7 39.3997 nan 0.1000 nan
  < 8 35.9511 nan 0.1000 nan
  < 9 33.1632 nan 0.1000 nan
  < 10 30.6850 nan 0.1000 nan
  < 100 6.8694 nan 0.1000 nan
  < 200 5.0890 nan 0.1000 nan
  < 300 3.9605 nan 0.1000 nan
  < 400 3.2681 nan 0.1000 nan
  < 500 2.7537 nan 0.1000 nan
  ---
  > 1 74.4121 -nan 0.1000 -nan
  > 2 65.6474 -nan 0.1000 -nan
  > 3 58.7034 -nan 0.1000 -nan
  > 4 52.6088 -nan 0.1000 -nan
  > 5 47.5788 -nan 0.1000 -nan
  > 6 43.1559 -nan 0.1000 -nan
  > 7 39.3997 -nan 0.1000 -nan
  > 8 35.9511 -nan 0.1000 -nan
  > 9 33.1632 -nan 0.1000 -nan
  > 10 30.6850 -nan 0.1000 -nan
  > 100 6.8694 -nan 0.1000 -nan
  > 200 5.0890 -nan 0.1000 -nan
  > 300 3.9605 -nan 0.1000 -nan
  > 400 3.2681 -nan 0.1000 -nan
  > 500 2.7537 -nan 0.1000 -nan
  Running 'regtest-family.R'
  Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
  Running 'regtest-gamboost.R'
  Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ... OK
  Running 'regtest-glmboost.R'
  Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK
  Running 'regtest-hatmatrix.R'
  Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK