• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'maxLik/DESCRIPTION' ... OK
• this is package 'maxLik' version '1.1-2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'maxLik' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  logLikGrad: no visible binding for global variable 'lastFuncParam'
  logLikGrad: no visible binding for global variable 'lastFuncGrad'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running 'BFGSR.R'
  Comparing 'BFGSR.Rout' to 'BFGSR.Rout.save' ...28c28
  < Function value: 1.183e+24
  ---
  > Function value: 8.104e+25
  31,33c31,33
  < [1,] 5.9320e+09 0
  < [2,] 2.9226e+10 0
  < [3,] 1.0872e+12 0
  ---
  > [1,] 6.2506e+12 0
  > [2,] 6.2506e+12 0
  > [3,] -1.7026e+12 0
  47c47
  < Function value: 2.4119e+21
  ---
  > Function value: 2.4071e+21
  50,52c50,52
  < [1,] 8877158828 0
  < [2,] 33431909639 0
  < [3,] -2635180904 0
  ---
  > [1,] 7684926721 0
  > [2,] 33806418069 0
  > [3,] -2319374069 0
  66c66
  < Number of iterations: 20
  ---
  > Number of iterations: 26
  72,73c72,73
  < [1,] -1.0270e-07 2.0539e-07
  < [2,] -9.0604e-08 1.8119e-07
  ---
  > [1,] 1.8402e-07 -3.6804e-07
  > [2,] 1.8402e-07 -3.6804e-07
  95c95
  < Number of iterations: 11
  ---
  > Number of iterations: 13
  101,102c101,102
  < [1,] 0.49988 -0.22308
  < [2,] 0.50009 -0.22318
  ---
  > [1,] 0.49999 -0.22313
  > [2,] 0.49999 -0.22313
  108c108
  < 5 outer iterations, barrier value 1.0137e-09
  ---
  > 5 outer iterations, barrier value 6.5361e-10
  Running 'constraints.R'
  Comparing 'constraints.Rout' to 'constraints.Rout.save' ...353,355c353,355
  < [1,] 0.5000 0.0256 19.5 <2e-16 ***
  < [2,] -1.0360 0.0581 -17.8 <2e-16 ***
  < [3,] 1.0106 0.0584 17.3 <2e-16 ***
  ---
  > [1,] 0.5000 0.0257 19.5 <2e-16 ***
  > [2,] -1.0360 0.0582 -17.8 <2e-16 ***
  > [3,] 1.0106 0.0585 17.3 <2e-16 ***
  373,374c373,374
  < iter 5 value 3739.836050
  < iter 6 value 3739.669310
  ---
  > iter 5 value 3739.836051
  > iter 6 value 3739.669311
  376,395c376,398
  < iter 8 value 3739.342554
  < iter 9 value 3739.271535
  < iter 10 value 3674.195391
  < iter 11 value 3671.068131
  < iter 12 value 3626.157704
  < iter 13 value 3589.946385
  < iter 14 value 3552.974009
  < iter 15 value 3551.811720
  < iter 16 value 3551.806145
  < iter 17 value 3551.796622
  < iter 18 value 3551.796375
  < iter 19 value 3551.782439
  < iter 20 value 3551.776228
  < iter 21 value 3551.776073
  < iter 22 value 3551.775690
  < iter 23 value 3551.774437
  < iter 24 value 3551.773439
  < iter 24 value 3551.773426
  < iter 24 value 3551.773425
  < final value 3551.773425
  ---
  > iter 8 value 3739.342555
  > iter 9 value 3739.271536
  > iter 10 value 3674.195892
  > iter 11 value 3671.068754
  > iter 12 value 3626.179862
  > iter 13 value 3589.958026
  > iter 14 value 3552.974654
  > iter 15 value 3551.811769
  > iter 16 value 3551.806189
  > iter 17 value 3551.796655
  > iter 18 value 3551.796407
  > iter 19 value 3551.782460
  > iter 20 value 3551.776241
  > iter 21 value 3551.776085
  > iter 22 value 3551.775694
  > iter 23 value 3551.775004
  > iter 24 value 3551.774150
  > iter 25 value 3551.773955
  > iter 26 value 3551.773847
  > iter 27 value 3551.773493
  > iter 27 value 3551.773487
  > iter 27 value 3551.773479
  > final value 3551.773479
  400c403
  < BFGS maximisation, 126 iterations
  ---
  > BFGS maximisation, 136 iterations
  407,408c410,411
  < [2,] -1.0360 0.0581 -17.8 <2e-16 ***
  < [3,] 1.0111 0.0584 17.3 <2e-16 ***
  ---
  > [2,] -1.0357 0.0581 -17.8 <2e-16 ***
  > [3,] 1.0112 0.0584 17.3 <2e-16 ***
  414c417
  < 1 outer iterations, barrier value -8.0817e-05
  ---
  > 1 outer iterations, barrier value -7.6798e-05
  487c490
  < initial value 3560.907807
  ---
  > initial value 3560.907808
  490c493
  < iter 4 value 3558.554875
  ---
  > iter 4 value 3558.554874
  510c513
  < initial value 3595.363567
  ---
  > initial value 3595.363566
  522c525
  < initial value 3575.687740
  ---
  > initial value 3575.687741
  890c893
  < initial value 3561.161194
  ---
  > initial value 3561.161193
  900,902c903,905
  < initial value 3623.062833
  < iter 2 value 3595.991939
  < iter 3 value 3595.709045
  ---
  > initial value 3623.062827
  > iter 2 value 3595.991937
  > iter 3 value 3595.709044
  911c914
  < initial value 3706.731798
  ---
  > initial value 3706.731799
  922,925c925,928
  < initial value 3633.375253
  < iter 2 value 3610.546095
  < iter 3 value 3610.527291
  < iter 4 value 3608.619658
  ---
  > initial value 3633.375248
  > iter 2 value 3610.546094
  > iter 3 value 3610.527290
  > iter 4 value 3608.619657
  933c936
  < initial value 3611.567446
  ---
  > initial value 3611.567445
  936c939
  < iter 4 value 3609.093783
  ---
  > iter 4 value 3609.093787
  944c947
  < initial value 3609.085219
  ---
  > initial value 3609.085218
  990c993
  < initial value 3561.161194
  ---
  > initial value 3561.161193
  1000,1002c1003,1005
  < initial value 3623.062833
  < iter 2 value 3595.991939
  < iter 3 value 3595.709045
  ---
  > initial value 3623.062827
  > iter 2 value 3595.991937
  > iter 3 value 3595.709044
  1011c1014
  < initial value 3706.731798
  ---
  > initial value 3706.731799
  1022,1025c1025,1028
  < initial value 3633.375253
  < iter 2 value 3610.546095
  < iter 3 value 3610.527291
  < iter 4 value 3608.619658
  ---
  > initial value 3633.375248
  > iter 2 value 3610.546094
  > iter 3 value 3610.527290
  > iter 4 value 3608.619657
  1033c1036
  < initial value 3611.567446
  ---
  > initial value 3611.567445
  1036c1039
  < iter 4 value 3609.093783
  ---
  > iter 4 value 3609.093787
  1044c1047
  < initial value 3609.085219
  ---
  > initial value 3609.085218
  1141c1144
  < [1,] -1.3034 0.0458 -28.5 <2e-16 ***
  ---
  > [1,] -1.3034 0.0458 -28.4 <2e-16 ***
  1179c1182
  < BFGS maximisation, 40 iterations
  ---
  > BFGS maximisation, 38 iterations
  1216c1219
  < BFGS maximisation, 40 iterations
  ---
  > BFGS maximisation, 38 iterations
  Running 'examples.R'
  Comparing 'examples.Rout' to 'examples.Rout.save' ...17c17
  < [1] 3.3561e-11 6.1608e-11
  ---
  > [1] -3.3317e-11 -5.6433e-11
  20c20
  < [1] -1.1102e-10 -1.1102e-10
  ---
  > [1] 1.1102e-10 1.1102e-10
  56,57c56,57
  < [1,] 3.3561e-11 -1.1102e-10
  < [2,] 6.1608e-11 -1.1102e-10
  ---
  > [1,] -3.3317e-11 1.1102e-10
  > [2,] -5.6433e-11 1.1102e-10
  203c203
  < [1] -5.6843e-08 -5.6843e-08
  ---
  > [1] 0.0000e+00 5.6843e-08
  207,208c207,208
  < [1,] -1004.9 0.0
  < [2,] 0.0 -2009.7
  ---
  > [1,] -1004.8 0.0
  > [2,] 0.0 -2009.8
  252,253c252,253
  < [1,] -1004.9 0.0
  < [2,] 0.0 -2009.7
  ---
  > [1,] -1004.8 0.0
  > [2,] 0.0 -2009.8
  256,257c256,257
  < [1,] 0.031546 0.000000
  < [2,] 0.000000 0.022307
  ---
  > [1,] 0.031547 0.000000
  > [2,] 0.000000 0.022306
  259c259
  < [1] 0.031546 0.022307
  ---
  > [1] 0.031547 0.022306
  276c276
  < [1,] -999.99 NA
  ---
  > [1,] -1000 NA
  319c319
  < [1,] -999.99 NA
  ---
  > [1,] -1000 NA
  324c324
  < [1,] 0.031623
  ---
  > [1,] 0.031622
  327c327
  < [1] 0.031623 0.000000
  ---
  > [1] 0.031622 0.000000
  346c346
  < [1] 1.585e-05
  ---
  > [1] 1.5834e-05
  350c350
  < [1,] -31.378
  ---
  > [1,] -31.292
  488c488
  < [1,] 3.19 1.585e-05
  ---
  > [1,] 3.19 1.5834e-05
  684c684
  < [1] -4.7751e-05
  ---
  > [1] -4.7753e-05
  824c824
  < [1,] 2.1979 -4.7751e-05
  ---
  > [1,] 2.1979 -4.7753e-05
  1009c1009
  < [1] 3.8675e-07
  ---
  > [1] -5.4529e-07
  1013c1013
  < [1,] -22.78
  ---
  > [1,] -22.759
  1043,1044c1043,1044
  < [9,] 0.3749330
  < [10,] 0.4544985
  ---
  > [9,] 0.3749329
  > [10,] 0.4544984
  1049c1049
  < [15,] -0.1279175
  ---
  > [15,] -0.1279176
  1056c1056
  < [22,] 0.1609605
  ---
  > [22,] 0.1609604
  1095,1096c1095,1096
  < [61,] -0.0034620
  < [62,] -0.0569845
  ---
  > [61,] -0.0034621
  > [62,] -0.0569846
  1116,1117c1116,1117
  < [82,] 0.4721639
  < [83,] 0.2493489
  ---
  > [82,] 0.4721638
  > [83,] 0.2493488
  1122,1123c1122,1123
  < [88,] 0.4639581
  < [89,] -0.4283272
  ---
  > [88,] 0.4639580
  > [89,] -0.4283273
  1349c1349
  < [1] -6.0751e-07
  ---
  > [1] -2.4158e-07
  1353c1353
  < [1,] -21.6
  ---
  > [1,] -21.618
  1384c1384
  < [1,] 2.151 -6.0751e-07
  ---
  > [1,] 2.151 -2.4158e-07
  1448c1448
  < [1] 1.1102e-10 1.1102e-10
  ---
  > [1] 1.1102e-10 0.0000e+00
  1452,1453c1452,1453
  < [1,] -2 0.0000
  < [2,] 0 -2.0002
  ---
  > [1,] -2.0002 0.0000
  > [2,] 0.0000 -2.0002
  1485c1485
  < [2,] 1 1.1102e-10
  ---
  > [2,] 1 0.0000e+00
  1499c1499
  < [1] 6.6613e-09 3.1086e-09
  ---
  > [1] 1.0880e-08 5.3291e-09
  1503,1504c1503,1504
  < [1,] -2 0.0000
  < [2,] 0 -2.0002
  ---
  > [1,] -2 0
  > [2,] 0 -2
  1520c1520
  < 31
  ---
  > 26
  1533c1533
  < Number of iterations: 31
  ---
  > Number of iterations: 26
  1539,1540c1539,1540
  < [1,] 2 6.6613e-09
  < [2,] 1 3.1086e-09
  ---
  > [1,] 2 1.0880e-08
  > [2,] 1 5.3291e-09
  1827d1826
  < -----Iteration 6 -----
  1830c1829
  < 6 iterations
  ---
  > 5 iterations
  1841c1840
  < [1] 2.6645e-09
  ---
  > [1] -5.2908e-07
  1845c1844
  < [1,] -17.266
  ---
  > [1,] -17.275
  1860c1859
  < [1] 6
  ---
  > [1] 5
  1972c1971
  < Newton-Raphson maximisation, 6 iterations
  ---
  > Newton-Raphson maximisation, 5 iterations
  1979c1978
  < Newton-Raphson maximisation, 6 iterations
  ---
  > Newton-Raphson maximisation, 5 iterations
  1999c1998
  < [1] 5.2458e-14
  ---
  > [1] 5.2236e-14
  2343c2342
  < [1] 2.2649e-08
  ---
  > [1] -3.4694e-08
  2347c2346
  < [1,] -28.813
  ---
  > [1,] -28.791
  2480c2479
  < [1,] 0.034707
  ---
  > [1,] 0.034733
  Running 'finalHessian.R'
  Comparing 'finalHessian.Rout' to 'finalHessian.Rout.save' ... OK
  Running 'fitExpDist.R'
  Comparing 'fitExpDist.Rout' to 'fitExpDist.Rout.save' ...55c55
  < [1] -4.2261e-07
  ---
  > [1] -3.8042e-07
  59c59
  < [1,] -22.329
  ---
  > [1,] -22.332
  187,188c187,188
  < [1] "Component 3: Mean relative difference: 0.024974"
  < [2] "Component 4: Mean relative difference: 0.00015908"
  ---
  > [1] "Component 3: Mean relative difference: 0.48766"
  > [2] "Component 4: Mean relative difference: 0.00047702"
  195,196c195,196
  < [1] "Component 3: Mean relative difference: 7.9742"
  < [2] "Component 4: Mean relative difference: 0.00036976"
  ---
  > [1] "Component 3: Mean relative difference: 7.2779"
  > [2] "Component 4: Mean relative difference: 0.00021071"
  233,234c233,234
  < [1] "Component 2: Mean relative difference: 3.5848e-08"
  < [2] "Component 3: Mean relative difference: 1.3306"
  ---
  > [1] "Component 2: Mean relative difference: 3.4951e-08"
  > [2] "Component 3: Mean relative difference: 1.2976"
  236,237c236,237
  < [4] "Component 4: Mean relative difference: 0.027613"
  < [5] "Component 8: Mean relative difference: 5.0093e-08"
  ---
  > [4] "Component 4: Mean relative difference: 0.027776"
  > [5] "Component 8: Mean relative difference: 4.885e-08"
  276,279c276,279
  < [1] "Component 2: Mean relative difference: 2.972e-08"
  < [2] "Component 3: Mean relative difference: 1.4328"
  < [3] "Component 4: Mean relative difference: 0.00079491"
  < [4] "Component 7: Mean relative difference: 4.1207e-08"
  ---
  > [1] "Component 2: Mean relative difference: 2.8629e-08"
  > [2] "Component 3: Mean relative difference: 1.3939"
  > [3] "Component 4: Mean relative difference: 0.00063593"
  > [4] "Component 7: Mean relative difference: 3.9649e-08"
  283c283
  < [1] "Component 3: Mean relative difference: 0.0031934"
  ---
  > [1] "Component 3: Mean relative difference: 0.000517"
  290c290
  < [1] "Component 3: Mean relative difference: 0.0037246"
  ---
  > [1] "Component 3: Mean relative difference: 0.0072872"
  332,334c332,334
  < [1] "Component 2: Mean relative difference: 7.3494e-05"
  < [2] "Component 3: Mean relative difference: 0.99988"
  < [3] "Component 4: Mean relative difference: 0.00079491"
  ---
  > [1] "Component 2: Mean relative difference: 7.3495e-05"
  > [2] "Component 3: Mean relative difference: 0.99989"
  > [3] "Component 4: Mean relative difference: 0.00047702"
  347c347
  < [2] "Component 4: Mean relative difference: 0.00057257"
  ---
  > [2] "Component 4: Mean relative difference: 0.0004135"
  383,386c383,385
  < [1] "Component 2: Mean relative difference: 1.0121e-05"
  < [2] "Component 3: Mean relative difference: 0.99912"
  < [3] "Component 4: Mean relative difference: 0.00079491"
  < [4] "Component 7: Mean relative difference: 1.4088e-05"
  ---
  > [1] "Component 2: Mean relative difference: 1.0122e-05"
  > [2] "Component 3: Mean relative difference: 0.99921"
  > [3] "Component 7: Mean relative difference: 1.409e-05"
  393,394c392,393
  < [1] "Component 3: Mean relative difference: 6.1255e-06"
  < [2] "Component 4: Mean relative difference: 0.00044576"
  ---
  > [1] "Component 3: Mean relative difference: 6.7051e-06"
  > [2] "Component 4: Mean relative difference: 0.00019046"
  459c458
  < as.Date, as.Date.numeric
  ---
  > as.Date
  542c541
  < [1,] 4.4785
  ---
  > [1,] 4.4778
  560c559
  < [1,] 4.475
  ---
  > [1,] 4.4757
  566c565
  < [1,] 4.475
  ---
  > [1,] 4.4778
  582,583c581,582
  < [1,] 0.043582
  < [1] "Mean relative difference: 0.027613"
  ---
  > [1,] 0.043568
  > [1] "Mean relative difference: 0.027776"
  606,607c605,606
  < [1,] 0.043513
  < [1] "Mean relative difference: 0.02843"
  ---
  > [1,] 0.043526
  > [1] "Mean relative difference: 0.028267"
  614,615c613,614
  < [1,] 0.043513
  < [1] "Mean relative difference: 0.02843"
  ---
  > [1,] 0.043568
  > [1] "Mean relative difference: 0.027776"
  Running 'fitNormalDist.R'
  Comparing 'fitNormalDist.Rout' to 'fitNormalDist.Rout.save' ...5646c5646
  < BFGS maximisation, 32 iterations
  ---
  > BFGS maximisation, 30 iterations
  5668c5668
  < [5] "Component 9: Mean relative difference: 0.030303"
  ---
  > [5] "Component 9: Mean relative difference: 0.090909"
  6220,6226c6220
  <
  < Attaching package: 'zoo'
  <
  < The following object(s) are masked from 'package:base':
  <
  < as.Date, as.Date.numeric
  <
  ---
  > Warning: locked binding of 'as.Date.numeric' will not be changed
  Running 'methods.R'
  Comparing 'methods.Rout' to 'methods.Rout.save' ... OK
  Running 'numericGradient.R'
  Comparing 'numericGradient.Rout' to 'numericGradient.Rout.save' ... OK
• checking PDF version of manual ... OK