• using R version 2.15.3 (2013-03-01)
• using platform: i386-w64-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'clValid/DESCRIPTION' ... OK
• this is package 'clValid' version '0.6-4'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'moe430a.db'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'clValid' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  BHI: no visible global function definition for 'biocLite'
  BSI: no visible global function definition for 'biocLite'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files should probably not be installed:
  'gbMacros.sty'
  The following directories should probably not be installed:
  'auto'
  
  Consider the use of a .Rinstignore file: see 'Writing R Extensions',
  or move the vignette sources from 'inst/doc' to 'vignettes'.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Welcome to Bioconductor
  
  Vignettes contain introductory material; view with
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")', and for packages 'citation("pkgname")'.
  
  Loading required package: annotate
  Loading required package: AnnotationDbi
  Loading required package: GO.db
  Loading required package: DBI
  
  Loading required package: moe430a.db
  Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
  there is no package called 'moe430a.db'
  Loading required package: RankAggreg
  Loading required package: gtools
  Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" -I "D:/Rcompile/recent/R-2.15.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-2.15.3/share/texmf/bibtex/bst"' had status 1
  Error: running 'texi2dvi' on 'clValid.tex' failed
  
  LaTeX errors:
  !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/2.15/clValid.Rcheck
  /vign_test/clValid/inst/doc/clValid-022.pdf): PDF inclusion: required page does
  not exist <0>
  ==> Fatal error occurred, no output PDF file produced!
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There were 4 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/clValid.Rcheck/00check.log'
  for details.