- using R version 2.15.3 (2013-03-01)
- using platform: i386-w64-mingw32 (32-bit)
- using session charset: ISO8859-1
- checking for file 'RobLoxBioC/DESCRIPTION' ... OK
- this is package 'RobLoxBioC' version '0.8.3'
- package encoding: latin1
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'RobLoxBioC' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'RobLoxBioC-Ex_i386.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
3,15d2
< Attaching package: 'BiocGenerics'
<
< The following object(s) are masked from 'package:stats':
<
< xtabs
<
< The following object(s) are masked from 'package:base':
<
< Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
< colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
< order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
< rownames, sapply, setdiff, table, tapply, union, unique
<
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< Vignettes contain introductory material; view with
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> Vignettes contain introductory material. To view, type
20c7
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
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> 'citation("Biobase")' and for packages 'citation("pkgname")'.
22c9
< Welcome to beadarray version 2.8.1
---
> Welcome to beadarray version 2.4.1
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< :startupmsg> Utilities for start-up messages (version 0.8)
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> :startupmsg> Utilities for start-up messages (version 0.7.3)
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< :SweaveListingUtils> 0.6.1)
< :SweaveListingUtils>
< :SweaveListingUtils> NOTE: Support for this package
< :SweaveListingUtils> will stop soon.
< :SweaveListingUtils>
< :SweaveListingUtils> Package 'knitr' is providing the
< :SweaveListingUtils> same functionality in a better
< :SweaveListingUtils> way.
---
> :SweaveListingUtils> 0.5.5)
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< :distr> 2.4)
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> :distr> 2.3.4)
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< :distrEx> Extensions of package distr (version 2.4)
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>
> Attaching package: 'evd'
>
> The following object(s) are masked from 'package:lattice':
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> qq
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>
> Attaching package: 'actuar'
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> The following object(s) are masked from 'package:grDevices':
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>
> :distrEx> Extensions of package distr (version 2.3.2)
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< :distrEx> attached /before/ package "distrEx". See
< :distrEx> distrExMASK().Note: Extreme value distribution
< :distrEx> functionality has been moved to
< :distrEx>
< :distrEx> package "RobExtremes". See distrExMOVED().
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> :distrEx> attached /before/ package "distrEx". See distrExMASK().
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< :RandVar> Implementation of random variables (version 0.9)
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> :RandVar> Implementation of random variables (version 0.8.1)
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< :distrMod> (version 2.4)
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> :distrMod> (version 2.3.3)
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< [1] 0.1642185 0.1567706 0.1571387 0.1609188 0.1617499 0.1607157 0.1382646
< [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1728984 0.1519412
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> [1] 0.1755693 0.1567648 0.1571403 0.1609188 0.1617499 0.1607157 0.1382646
> [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1729001 0.1519412
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< 3.46 0.25 3.71
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> 5.425 0.084 5.528
OK
** running examples for arch 'x64' ... OK
** checking differences from 'RobLoxBioC-Ex_x64.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
3,15d2
< Attaching package: 'BiocGenerics'
<
< The following object(s) are masked from 'package:stats':
<
< xtabs
<
< The following object(s) are masked from 'package:base':
<
< Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
< colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
< order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
< rownames, sapply, setdiff, table, tapply, union, unique
<
18c5
< Vignettes contain introductory material; view with
---
> Vignettes contain introductory material. To view, type
20c7
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
---
> 'citation("Biobase")' and for packages 'citation("pkgname")'.
22c9
< Welcome to beadarray version 2.8.1
---
> Welcome to beadarray version 2.4.1
24c11
< :startupmsg> Utilities for start-up messages (version 0.8)
---
> :startupmsg> Utilities for start-up messages (version 0.7.3)
31,38c18
< :SweaveListingUtils> 0.6.1)
< :SweaveListingUtils>
< :SweaveListingUtils> NOTE: Support for this package
< :SweaveListingUtils> will stop soon.
< :SweaveListingUtils>
< :SweaveListingUtils> Package 'knitr' is providing the
< :SweaveListingUtils> same functionality in a better
< :SweaveListingUtils> way.
---
> :SweaveListingUtils> 0.5.5)
64c44
< :distr> 2.4)
---
> :distr> 2.3.4)
89c69,83
< :distrEx> Extensions of package distr (version 2.4)
---
>
> Attaching package: 'evd'
>
> The following object(s) are masked from 'package:lattice':
>
> qq
>
>
> Attaching package: 'actuar'
>
> The following object(s) are masked from 'package:grDevices':
>
> cm
>
> :distrEx> Extensions of package distr (version 2.3.2)
92,96c86
< :distrEx> attached /before/ package "distrEx". See
< :distrEx> distrExMASK().Note: Extreme value distribution
< :distrEx> functionality has been moved to
< :distrEx>
< :distrEx> package "RobExtremes". See distrExMOVED().
---
> :distrEx> attached /before/ package "distrEx". See distrExMASK().
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< :RandVar> Implementation of random variables (version 0.9)
---
> :RandVar> Implementation of random variables (version 0.8.1)
121c111
< :distrMod> (version 2.4)
---
> :distrMod> (version 2.3.3)
349c339
< 4.23 0.31 4.54
---
> 5.425 0.084 5.528
OK
- checking PDF version of manual ... OK