• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'RobLoxBioC/DESCRIPTION' ... OK
• this is package 'RobLoxBioC' version '0.8.2'
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'RobLoxBioC' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking examples ... OK
• checking differences from 'RobLoxBioC-Ex.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
  9c9,16
  < Welcome to beadarray version 2.4.2
  ---
  >
  > Attaching package: 'reshape'
  >
  > The following object(s) are masked from 'package:plyr':
  >
  > rename, round_any
  >
  > Welcome to beadarray version 2.4.1
  11c18,25
  < :startupmsg> Utilities for start-up messages (version 0.7.2)
  ---
  >
  > Attaching package: 'beadarray'
  >
  > The following object(s) are masked from 'package:plyr':
  >
  > summarize
  >
  > :startupmsg> Utilities for start-up messages (version 0.7.3)
  18c32
  < :SweaveListingUtils> 0.5.5)
  ---
  > :SweaveListingUtils> 0.5.4)
  44c58
  < :distr> 2.3.3)
  ---
  > :distr> 2.3.4)
  83c97
  < :distrEx> Extensions of package distr (version 2.3.1)
  ---
  > :distrEx> Extensions of package distr (version 2.3.2)
  111c125
  < :distrMod> (version 2.3.1)
  ---
  > :distrMod> (version 2.3.3)
  217,218c231,232
  < [1] 0.1642185 0.1567706 0.1571387 0.1609188 0.1617499 0.1607157 0.1382646
  < [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1728984 0.1519412
  ---
  > [1] 0.1755693 0.1567648 0.1571403 0.1609188 0.1617499 0.1607157 0.1382646
  > [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1729001 0.1519412
  339c353
  < 7.27 0.31 7.62
  ---
  > 5.597 0.044 5.660
  349c363
  < > concentrations <- as.numeric(colnames(SpikeIn))
  ---
  > > concentrations <- as.numeric(sampleNames(SpikeIn))
  OK
• checking PDF version of manual ... OK