• using R version 2.14.2 (2012-02-29)
• using platform: i386-pc-mingw32 (32-bit)
• using session charset: ISO8859-1
• checking for file 'PKgraph/DESCRIPTION' ... OK
• this is package 'PKgraph' version '1.7'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'PKgraph' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cleanFigureButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  com.hist.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  com.hist.okButtonHandler.0125: no visible binding for global variable
  'pk.dialog.notebook'
  com.scatter.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  com.scatter.okButtonHandler.0125: no visible binding for global
  variable 'pk.dialog.notebook'
  com.time.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  com.time.okButtonHandler.back: no visible binding for global variable
  'pk.dialog.notebook'
  compare.pred.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.cov.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.gof.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.ind.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.random.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.resid.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  model.struct.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  openDataHandler : <anonymous> : <anonymous>: no visible binding for
  '<<-' assignment to 'test'
  openDataHandler : <anonymous> : <anonymous>: no visible binding for
  global variable 'test'
  psn.bootstrap: no visible binding for global variable
  'minimization.successful'
  psn.bootstrap: no visible binding for global variable
  'covariance.step.successful'
  psn.bootstrap: no visible binding for global variable
  'covariance.step.warnings'
  psn.bootstrap: no visible binding for global variable
  'estimate.near.boundary'
  psn.bootstrap: no visible binding for global variable
  'pk.dialog.notebook'
  psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
  psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'minimization.successful'
  psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.successful'
  psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.warnings'
  psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'estimate.near.boundary'
  psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
  psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'ID'
  psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'resampleID'
  psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'para'
  psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'VAR'
  psn.cdd: no visible binding for global variable
  'minimization.successful'
  psn.cdd: no visible binding for global variable
  'covariance.step.successful'
  psn.cdd: no visible binding for global variable
  'covariance.step.warnings'
  psn.cdd: no visible binding for global variable
  'estimate.near.boundary'
  psn.cdd: no visible binding for global variable 'outside.n.sd'
  psn.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  psn.outlier.okButtonHandler: no visible binding for global variable
  'ID'
  psn.outlier.okButtonHandler: no visible binding for global variable
  'cook.scores'
  psn.outlier.okButtonHandler: no visible binding for global variable
  'cov.ratios'
  saveImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  saveImageHandler.matrix: no visible binding for global variable
  'pk.dialog.notebook'
  saveImageHandler.pkmodel: no visible binding for global variable
  'pk.dialog.notebook'
  summary.bi.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.bi.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.heat.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.matrix.ggobiImageHandler: no visible binding for global
  variable 'pk.dialog.notebook'
  summary.matrix.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.para.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.tri.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.uni.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  summary.uni.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  val.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  validation.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'runID'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'deleteID'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'ID'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'para'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'resampleID'
  vis.outlier.okButtonHandler: no visible global function definition for
  'namerows'
  vis.outlier.okButtonHandler: no visible global function definition for
  'melt'
  vis.outlier.okButtonHandler: no visible global function definition for
  'ddply'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'variable'
  vis.outlier.okButtonHandler: no visible global function definition for
  'rescaler'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'value'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'rng'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'cor1'
  vis.outlier.okButtonHandler: no visible binding for global variable
  'cor2'
• checking Rd files ... NOTE
  prepare_Rd: PKgraph.Rd:11-13: Dropping empty section \arguments
  prepare_Rd: PKgraph.Rd:17-19: Dropping empty section \examples
  prepare_Rd: pkdata.Rd:9-11: Dropping empty section \format
  prepare_Rd: pkdata.Rd:14-16: Dropping empty section \examples
  prepare_Rd: pkdata2.Rd:9-11: Dropping empty section \format
  prepare_Rd: pkdata2.Rd:14-16: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking examples ... NONE
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK