- using R version 2.15.3 (2013-03-01)
- using platform: i386-w64-mingw32 (32-bit)
- using session charset: ISO8859-1
- checking for file 'BayesXsrc/DESCRIPTION' ... OK
- this is package 'BayesXsrc' version '2.1-1'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'BayesXsrc' can be installed ... OK
- checking installed package size ... NOTE
installed size is 25.1Mb
sub-directories of 1Mb or more:
libs 25.0Mb
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'mcmc.R'
Comparing 'mcmc.Rout' to 'mcmc.Rout.save' ...7,8c7,8
< NOTE: created directory d:\Rcompile\CRANpkg\local\2.15\BayesXsrc.Rcheck\tests_i386\temp
< NOTE: created directory d:\Rcompile\CRANpkg\local\2.15\BayesXsrc.Rcheck\tests_i386\output
---
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
88c88
< Mean: 0.0111982
---
> Mean: 0.0120641
90,91c90,91
< Minimum: 0.0440025
< Maximum: 0.0166369
---
> Minimum: 0.0444994
> Maximum: 0.0170617
101c101
< Mean: 0.220414
---
> Mean: 0.235939
103,104c103,104
< Minimum: 0.726966
< Maximum: 0.457889
---
> Minimum: 0.670558
> Maximum: 0.398403
114c114
< Mean: 0.102984
---
> Mean: 0.402133
116,117c116,117
< Minimum: 0.753882
< Maximum: 4.6935
---
> Minimum: 0.864567
> Maximum: 2.83032
127c127
< Mean: 0.323649
---
> Mean: 0.283041
129,130c129,130
< Minimum: 1.13796
< Maximum: 0.484293
---
> Minimum: 0.598732
> Maximum: 1.05882
140c140
< Mean: 3.5908
---
> Mean: 3.01852
142,143c142,143
< Minimum: 0.614369
< Maximum: 30.734
---
> Minimum: 0.631221
> Maximum: 29.0583
156,157c156,157
< Mean: 0.000420262
< Variance: 0.021098
---
> Mean: 0.00073483
> Variance: 0.0545616
159c159
< Maximum: 0.00680764
---
> Maximum: 0
169,172c169,172
< Mean: 0.00738921
< Variance: 0.0147143
< Minimum: 0.0336872
< Maximum: 0.0933691
---
> Mean: 0.0055385
> Variance: 0.0618065
> Minimum: 0.0428222
> Maximum: 0.0748301
182,185c182,185
< Mean: 0.00670845
< Variance: 0.107502
< Minimum: 0
< Maximum: 0.0103048
---
> Mean: 0.0258003
> Variance: 0.00376635
> Minimum: 0.0761123
> Maximum: 0
195,198c195,198
< Mean: 0.00736615
< Variance: 0.0343076
< Minimum: 0.159311
< Maximum: 0.0824158
---
> Mean: 0.00806802
> Variance: 0.0839744
> Minimum: 0.0591563
> Maximum: 0.147929
208,211c208,211
< Mean: 0.0407254
< Variance: 0.0506786
< Minimum: 0.0933067
< Maximum: 0.649833
---
> Mean: 0.0699433
> Variance: 0.720275
> Minimum: 0
> Maximum: 1.70914
224,225c224,225
< Mean: 1.06745e-006
< Variance: 0.0317959
---
> Mean: 0.000238756
> Variance: 0.0259043
237,240c237,240
< Mean: 0.0030169
< Variance: 0.0664223
< Minimum: 0.0264502
< Maximum: 0.061025
---
> Mean: 0.0024004
> Variance: 0.0191615
> Minimum: 0.0356155
> Maximum: 0.027562
250,253c250,253
< Mean: 0.0227583
< Variance: 0.136974
< Minimum: 0.16618
< Maximum: 0.68668
---
> Mean: 0.0216987
> Variance: 0.101507
> Minimum: 0.323179
> Maximum: 0
263,266c263,266
< Mean: 0.00624926
< Variance: 0.0200127
< Minimum: 0.0386467
< Maximum: 0.0322431
---
> Mean: 0.00619759
> Variance: 0.0751093
> Minimum: 0.424677
> Maximum: 0.116076
276,277c276,277
< Mean: 0.025958
< Variance: 0.293114
---
> Mean: 0.117659
> Variance: 0.539608
279c279
< Maximum: 0.153913
---
> Maximum: 0.242684
292c292
< SIMULATION RUN TIME: 1 seconds
---
> SIMULATION RUN TIME: 0 seconds
307,313c307,313
< Mean: 1820.9468
< Std. Dev: 5.4187055
< 2.5% Quantile: 1811.5929
< 10% Quantile: 1814.5233
< 50% Quantile: 1820.5804
< 90% Quantile: 1827.76
< 97.5% Quantile: 1833.4639
---
> Mean: 1820.6559
> Std. Dev: 5.6212139
> 2.5% Quantile: 1811.2326
> 10% Quantile: 1814.1349
> 50% Quantile: 1819.9995
> 90% Quantile: 1828.2074
> 97.5% Quantile: 1833.854
317,323c317,323
< Mean: 998.52754
< Std. Dev: 42.855019
< 2.5% Quantile: 914.5167
< 10% Quantile: 945.44291
< 50% Quantile: 997.90929
< 90% Quantile: 1052.5427
< 97.5% Quantile: 1085.8736
---
> Mean: 998.98282
> Std. Dev: 43.455819
> 2.5% Quantile: 910.95993
> 10% Quantile: 944.28621
> 50% Quantile: 997.5653
> 90% Quantile: 1055.0596
> 97.5% Quantile: 1080.1162
332,334c332,334
< Deviance(bar_mu): 1806.605
< pD: 14.341843
< DIC: 1835.2887
---
> Deviance(bar_mu): 1806.4653
> pD: 14.19061
> DIC: 1834.8465
338,340c338,340
< Deviance(bar_mu): 983.25714
< pD: 15.270394
< DIC: 1013.7979
---
> Deviance(bar_mu): 983.84152
> pD: 15.141302
> DIC: 1014.1241
346,352c346,352
< Mean: 0.362573
< Std. dev.: 0.0156325
< 2.5% Quantile: 0.331605
< 10% Quantile: 0.343126
< 50% Quantile: 0.362337
< 90% Quantile: 0.382129
< 97.5% Quantile: 0.394499
---
> Mean: 0.362311
> Std. dev.: 0.0158258
> 2.5% Quantile: 0.333712
> 10% Quantile: 0.342526
> 50% Quantile: 0.361939
> 90% Quantile: 0.382146
> 97.5% Quantile: 0.395518
363c363
< const 1.79352 0.0199653 1.75203 1.79389 1.83121
---
> const 1.79288 0.0188866 1.75682 1.79247 1.82894
389,395c389,395
< Mean: 0.0227875
< Std. dev.: 0.0160739
< 2.5% Quantile: 0.00725905
< 10% Quantile: 0.00958788
< 50% Quantile: 0.0183843
< 90% Quantile: 0.0404459
< 97.5% Quantile: 0.0612133
---
> Mean: 0.0239194
> Std. dev.: 0.0171234
> 2.5% Quantile: 0.00717269
> 10% Quantile: 0.00984886
> 50% Quantile: 0.0194797
> 90% Quantile: 0.0439335
> 97.5% Quantile: 0.0705248
402,408c402,408
< Mean: 21.8791 (df: 7.4121)
< Std. dev.: 11.857
< 2.5% Quantile: 5.89026 (df: 9.68364)
< 10% Quantile: 8.84541 (df: 8.93762)
< 50% Quantile: 19.6404 (df: 7.58367)
< 90% Quantile: 37.7513 (df: 6.58846)
< 97.5% Quantile: 50.3337 (df: 6.18338)
---
> Mean: 21.2581 (df: 7.4576)
> Std. dev.: 12.1211
> 2.5% Quantile: 5.15297 (df: 9.93666)
> 10% Quantile: 8.43793 (df: 9.02229)
> 50% Quantile: 18.5992 (df: 7.67132)
> 90% Quantile: 36.3494 (df: 6.64326)
> 97.5% Quantile: 51.8365 (df: 6.14309)
434,440c434,440
< Mean: 0.00186434
< Std. dev.: 0.0021255
< 2.5% Quantile: 0.000274863
< 10% Quantile: 0.000411235
< 50% Quantile: 0.00123939
< 90% Quantile: 0.00391876
< 97.5% Quantile: 0.00755706
---
> Mean: 0.00199966
> Std. dev.: 0.002788
> 2.5% Quantile: 0.000277306
> 10% Quantile: 0.000443697
> 50% Quantile: 0.00120169
> 90% Quantile: 0.00414527
> 97.5% Quantile: 0.00856249
447,453c447,453
< Mean: 405.307 (df: 3.83681)
< Std. dev.: 354.838
< 2.5% Quantile: 46.111 (df: 6.32484)
< 10% Quantile: 91.817 (df: 5.42036)
< 50% Quantile: 294.216 (df: 4.13843)
< 90% Quantile: 887.482 (df: 3.18227)
< 97.5% Quantile: 1357.63 (df: 2.87249)
---
> Mean: 391.278 (df: 3.86896)
> Std. dev.: 324.746
> 2.5% Quantile: 41.605 (df: 6.46957)
> 10% Quantile: 86.314 (df: 5.49696)
> 50% Quantile: 300.189 (df: 4.11889)
> 90% Quantile: 820.361 (df: 3.24291)
> 97.5% Quantile: 1313.51 (df: 2.8955)
Running 'reml.R'
Comparing 'reml.Rout' to 'reml.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
20c22
< Termination criterion: 1e-005
---
> Termination criterion: 1e-05
79c81
< relative changes in the variance parameters: 5.42988e-005
---
> relative changes in the variance parameters: 5.42988e-05
82,83c84,85
< relative changes in the regression coefficients: 5.02091e-005
< relative changes in the variance parameters: 2.17069e-005
---
> relative changes in the regression coefficients: 5.02091e-05
> relative changes in the variance parameters: 2.17069e-05
86,87c88,89
< relative changes in the regression coefficients: 2.00738e-005
< relative changes in the variance parameters: 8.68815e-006
---
> relative changes in the regression coefficients: 2.00738e-05
> relative changes in the variance parameters: 8.68815e-06
90,91c92,93
< relative changes in the regression coefficients: 8.03423e-006
< relative changes in the variance parameters: 3.47575e-006
---
> relative changes in the regression coefficients: 8.03423e-06
> relative changes in the variance parameters: 3.47575e-06
127c129
< Estimated variance: 1.23974e-005
---
> Estimated variance: 1.23974e-05
Running 'step.R'
Comparing 'step.Rout' to 'step.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
113c115
< Mean: 0.0574573
---
> Mean: 0.0127105
115,116c117,118
< Minimum: 0.153223
< Maximum: 0.111493
---
> Minimum: 0.155454
> Maximum: 0.127149
126c128
< Mean: 0.108696
---
> Mean: 0.131794
128,129c130,131
< Minimum: 0.340605
< Maximum: 0.329847
---
> Minimum: 0.377453
> Maximum: 0.296694
139c141
< Mean: 0.878004
---
> Mean: 0.875678
141,142c143,144
< Minimum: 2.77366
< Maximum: 4.28986
---
> Minimum: 1.81419
> Maximum: 3.72164
152,155c154,157
< Mean: 0.00255804
< Variance: 0.0517088
< Minimum: 0.0426491
< Maximum: 0.00580313
---
> Mean: 0.0035267
> Variance: 0.0412186
> Minimum: 0.00587859
> Maximum: 0.00517516
165,168c167,170
< Mean: 0.00605693
< Variance: 0.0522406
< Minimum: 0.0473652
< Maximum: 0.0412544
---
> Mean: 0.00699623
> Variance: 0.0263269
> Minimum: 0.0172653
> Maximum: 0.0443969
178,181c180,183
< Mean: 0.0556271
< Variance: 0.0598104
< Minimum: 0.135187
< Maximum: 0.0529294
---
> Mean: 0.0559648
> Variance: 0.0115742
> Minimum: 0.212353
> Maximum: 0.0293845
191,194c193,196
< Mean: 0.000824886
< Variance: 0.0613771
< Minimum: 0.0147307
< Maximum: 0.000928627
---
> Mean: 0.000773709
> Variance: 0.0417637
> Minimum: 0.00545731
> Maximum: 0
204,207c206,209
< Mean: 0.00246084
< Variance: 0.0307177
< Minimum: 0.0209267
< Maximum: 0.0477595
---
> Mean: 0.00315642
> Variance: 0.0222178
> Minimum: 0.00651462
> Maximum: 0.0265861
217,220c219,222
< Mean: 0.0388909
< Variance: 0.0188457
< Minimum: 0.0714988
< Maximum: 0.0680708
---
> Mean: 0.0155678
> Variance: 0.038029
> Minimum: 0.0251704
> Maximum: 0.0149953
243,249c245,251
< Mean: 1817.9305
< Std. Dev: 5.2314871
< 2.5% Quantile: 1810.158
< 10% Quantile: 1812.1184
< 50% Quantile: 1817.2047
< 90% Quantile: 1824.7666
< 97.5% Quantile: 1829.9301
---
> Mean: 1817.9364
> Std. Dev: 5.1296588
> 2.5% Quantile: 1810.0401
> 10% Quantile: 1811.7848
> 50% Quantile: 1817.2257
> 90% Quantile: 1824.7163
> 97.5% Quantile: 1829.917
253,259c255,261
< Mean: 1009.1812
< Std. Dev: 5.2314871
< 2.5% Quantile: 1001.4087
< 10% Quantile: 1003.3691
< 50% Quantile: 1008.4554
< 90% Quantile: 1016.0174
< 97.5% Quantile: 1021.1808
---
> Mean: 1009.1872
> Std. Dev: 5.1296588
> 2.5% Quantile: 1001.2909
> 10% Quantile: 1003.0356
> 50% Quantile: 1008.4765
> 90% Quantile: 1015.967
> 97.5% Quantile: 1021.1677
268,270c270,272
< Deviance(bar_mu): 1808.7217
< pD: 9.2088311
< DIC: 1827.1393
---
> Deviance(bar_mu): 1808.7997
> pD: 9.1367845
> DIC: 1827.0732
274,276c276,278
< Deviance(bar_mu): 999.97241
< pD: 9.2088311
< DIC: 1018.3901
---
> Deviance(bar_mu): 1000.0504
> pD: 9.1367845
> DIC: 1018.324
283c285
< Std. dev.: 2.26941e-008
---
> Std. dev.: 4.01226e-08
299,300c301,302
< const 1.41807 0.0369205 1.34712 1.42039 1.49491
< x2 0.753113 0.0627148 0.628295 0.752562 0.884668
---
> const 1.41724 0.0373261 1.33891 1.417 1.48913
> x2 0.754898 0.0646459 0.632207 0.754435 0.889085
Running 'zfileremoves.R'
** running tests for arch 'x64' OK
Running 'mcmc.R'
Comparing 'mcmc.Rout' to 'mcmc.Rout.save' ...7,8c7,8
< NOTE: created directory d:\Rcompile\CRANpkg\local\2.15\BayesXsrc.Rcheck\tests_x64\temp
< NOTE: created directory d:\Rcompile\CRANpkg\local\2.15\BayesXsrc.Rcheck\tests_x64\output
---
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
74c74
< APPROXIMATE RUN TIME: 1 seconds
---
> APPROXIMATE RUN TIME: 0 seconds
88c88
< Mean: 0.0111982
---
> Mean: 0.0120641
90,91c90,91
< Minimum: 0.0440025
< Maximum: 0.0166369
---
> Minimum: 0.0444994
> Maximum: 0.0170617
101c101
< Mean: 0.220414
---
> Mean: 0.235939
103,104c103,104
< Minimum: 0.726966
< Maximum: 0.457889
---
> Minimum: 0.670558
> Maximum: 0.398403
114c114
< Mean: 0.102984
---
> Mean: 0.402133
116,117c116,117
< Minimum: 0.753882
< Maximum: 4.6935
---
> Minimum: 0.864567
> Maximum: 2.83032
127c127
< Mean: 0.323649
---
> Mean: 0.283041
129,130c129,130
< Minimum: 1.13796
< Maximum: 0.484293
---
> Minimum: 0.598732
> Maximum: 1.05882
140c140
< Mean: 3.5908
---
> Mean: 3.01852
142,143c142,143
< Minimum: 0.614369
< Maximum: 30.734
---
> Minimum: 0.631221
> Maximum: 29.0583
156,157c156,157
< Mean: 0.000420262
< Variance: 0.021098
---
> Mean: 0.00073483
> Variance: 0.0545616
159c159
< Maximum: 0.00680764
---
> Maximum: 0
169,172c169,172
< Mean: 0.00738921
< Variance: 0.0147143
< Minimum: 0.0336872
< Maximum: 0.0933691
---
> Mean: 0.0055385
> Variance: 0.0618065
> Minimum: 0.0428222
> Maximum: 0.0748301
182,185c182,185
< Mean: 0.00670845
< Variance: 0.107502
< Minimum: 0
< Maximum: 0.0103048
---
> Mean: 0.0258003
> Variance: 0.00376635
> Minimum: 0.0761123
> Maximum: 0
195,198c195,198
< Mean: 0.00736615
< Variance: 0.0343076
< Minimum: 0.159311
< Maximum: 0.0824158
---
> Mean: 0.00806802
> Variance: 0.0839744
> Minimum: 0.0591563
> Maximum: 0.147929
208,211c208,211
< Mean: 0.0407254
< Variance: 0.0506786
< Minimum: 0.0933067
< Maximum: 0.649833
---
> Mean: 0.0699433
> Variance: 0.720275
> Minimum: 0
> Maximum: 1.70914
224,225c224,225
< Mean: 1.06745e-006
< Variance: 0.0317959
---
> Mean: 0.000238756
> Variance: 0.0259043
237,240c237,240
< Mean: 0.0030169
< Variance: 0.0664223
< Minimum: 0.0264502
< Maximum: 0.061025
---
> Mean: 0.0024004
> Variance: 0.0191615
> Minimum: 0.0356155
> Maximum: 0.027562
250,253c250,253
< Mean: 0.0227583
< Variance: 0.136974
< Minimum: 0.16618
< Maximum: 0.68668
---
> Mean: 0.0216987
> Variance: 0.101507
> Minimum: 0.323179
> Maximum: 0
263,266c263,266
< Mean: 0.00624926
< Variance: 0.0200127
< Minimum: 0.0386467
< Maximum: 0.0322431
---
> Mean: 0.00619759
> Variance: 0.0751093
> Minimum: 0.424677
> Maximum: 0.116076
276,277c276,277
< Mean: 0.025958
< Variance: 0.293114
---
> Mean: 0.117659
> Variance: 0.539608
279c279
< Maximum: 0.153913
---
> Maximum: 0.242684
292c292
< SIMULATION RUN TIME: 1 seconds
---
> SIMULATION RUN TIME: 0 seconds
307,313c307,313
< Mean: 1820.9468
< Std. Dev: 5.4187055
< 2.5% Quantile: 1811.5929
< 10% Quantile: 1814.5233
< 50% Quantile: 1820.5804
< 90% Quantile: 1827.76
< 97.5% Quantile: 1833.4639
---
> Mean: 1820.6559
> Std. Dev: 5.6212139
> 2.5% Quantile: 1811.2326
> 10% Quantile: 1814.1349
> 50% Quantile: 1819.9995
> 90% Quantile: 1828.2074
> 97.5% Quantile: 1833.854
317,323c317,323
< Mean: 998.52754
< Std. Dev: 42.855019
< 2.5% Quantile: 914.5167
< 10% Quantile: 945.44291
< 50% Quantile: 997.90929
< 90% Quantile: 1052.5427
< 97.5% Quantile: 1085.8736
---
> Mean: 998.98282
> Std. Dev: 43.455819
> 2.5% Quantile: 910.95993
> 10% Quantile: 944.28621
> 50% Quantile: 997.5653
> 90% Quantile: 1055.0596
> 97.5% Quantile: 1080.1162
332,334c332,334
< Deviance(bar_mu): 1806.605
< pD: 14.341843
< DIC: 1835.2887
---
> Deviance(bar_mu): 1806.4653
> pD: 14.19061
> DIC: 1834.8465
338,340c338,340
< Deviance(bar_mu): 983.25714
< pD: 15.270394
< DIC: 1013.7979
---
> Deviance(bar_mu): 983.84152
> pD: 15.141302
> DIC: 1014.1241
346,352c346,352
< Mean: 0.362573
< Std. dev.: 0.0156325
< 2.5% Quantile: 0.331605
< 10% Quantile: 0.343126
< 50% Quantile: 0.362337
< 90% Quantile: 0.382129
< 97.5% Quantile: 0.394499
---
> Mean: 0.362311
> Std. dev.: 0.0158258
> 2.5% Quantile: 0.333712
> 10% Quantile: 0.342526
> 50% Quantile: 0.361939
> 90% Quantile: 0.382146
> 97.5% Quantile: 0.395518
363c363
< const 1.79352 0.0199653 1.75203 1.79389 1.83121
---
> const 1.79288 0.0188866 1.75682 1.79247 1.82894
389,395c389,395
< Mean: 0.0227875
< Std. dev.: 0.0160739
< 2.5% Quantile: 0.00725905
< 10% Quantile: 0.00958788
< 50% Quantile: 0.0183843
< 90% Quantile: 0.0404459
< 97.5% Quantile: 0.0612133
---
> Mean: 0.0239194
> Std. dev.: 0.0171234
> 2.5% Quantile: 0.00717269
> 10% Quantile: 0.00984886
> 50% Quantile: 0.0194797
> 90% Quantile: 0.0439335
> 97.5% Quantile: 0.0705248
402,408c402,408
< Mean: 21.8791 (df: 7.4121)
< Std. dev.: 11.857
< 2.5% Quantile: 5.89026 (df: 9.68364)
< 10% Quantile: 8.84541 (df: 8.93762)
< 50% Quantile: 19.6404 (df: 7.58367)
< 90% Quantile: 37.7513 (df: 6.58846)
< 97.5% Quantile: 50.3337 (df: 6.18338)
---
> Mean: 21.2581 (df: 7.4576)
> Std. dev.: 12.1211
> 2.5% Quantile: 5.15297 (df: 9.93666)
> 10% Quantile: 8.43793 (df: 9.02229)
> 50% Quantile: 18.5992 (df: 7.67132)
> 90% Quantile: 36.3494 (df: 6.64326)
> 97.5% Quantile: 51.8365 (df: 6.14309)
434,440c434,440
< Mean: 0.00186434
< Std. dev.: 0.0021255
< 2.5% Quantile: 0.000274863
< 10% Quantile: 0.000411235
< 50% Quantile: 0.00123939
< 90% Quantile: 0.00391876
< 97.5% Quantile: 0.00755706
---
> Mean: 0.00199966
> Std. dev.: 0.002788
> 2.5% Quantile: 0.000277306
> 10% Quantile: 0.000443697
> 50% Quantile: 0.00120169
> 90% Quantile: 0.00414527
> 97.5% Quantile: 0.00856249
447,453c447,453
< Mean: 405.307 (df: 3.83681)
< Std. dev.: 354.838
< 2.5% Quantile: 46.111 (df: 6.32484)
< 10% Quantile: 91.817 (df: 5.42036)
< 50% Quantile: 294.216 (df: 4.13843)
< 90% Quantile: 887.482 (df: 3.18227)
< 97.5% Quantile: 1357.63 (df: 2.87249)
---
> Mean: 391.278 (df: 3.86896)
> Std. dev.: 324.746
> 2.5% Quantile: 41.605 (df: 6.46957)
> 10% Quantile: 86.314 (df: 5.49696)
> 50% Quantile: 300.189 (df: 4.11889)
> 90% Quantile: 820.361 (df: 3.24291)
> 97.5% Quantile: 1313.51 (df: 2.8955)
Running 'reml.R'
Comparing 'reml.Rout' to 'reml.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
20c22
< Termination criterion: 1e-005
---
> Termination criterion: 1e-05
79c81
< relative changes in the variance parameters: 5.42988e-005
---
> relative changes in the variance parameters: 5.42988e-05
82,83c84,85
< relative changes in the regression coefficients: 5.02091e-005
< relative changes in the variance parameters: 2.17069e-005
---
> relative changes in the regression coefficients: 5.02091e-05
> relative changes in the variance parameters: 2.17069e-05
86,87c88,89
< relative changes in the regression coefficients: 2.00738e-005
< relative changes in the variance parameters: 8.68815e-006
---
> relative changes in the regression coefficients: 2.00738e-05
> relative changes in the variance parameters: 8.68815e-06
90,91c92,93
< relative changes in the regression coefficients: 8.03423e-006
< relative changes in the variance parameters: 3.47575e-006
---
> relative changes in the regression coefficients: 8.03423e-06
> relative changes in the variance parameters: 3.47575e-06
127c129
< Estimated variance: 1.23974e-005
---
> Estimated variance: 1.23974e-05
Running 'step.R'
Comparing 'step.Rout' to 'step.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
113c115
< Mean: 0.0574573
---
> Mean: 0.0127105
115,116c117,118
< Minimum: 0.153223
< Maximum: 0.111493
---
> Minimum: 0.155454
> Maximum: 0.127149
126c128
< Mean: 0.108696
---
> Mean: 0.131794
128,129c130,131
< Minimum: 0.340605
< Maximum: 0.329847
---
> Minimum: 0.377453
> Maximum: 0.296694
139c141
< Mean: 0.878004
---
> Mean: 0.875678
141,142c143,144
< Minimum: 2.77366
< Maximum: 4.28986
---
> Minimum: 1.81419
> Maximum: 3.72164
152,155c154,157
< Mean: 0.00255804
< Variance: 0.0517088
< Minimum: 0.0426491
< Maximum: 0.00580313
---
> Mean: 0.0035267
> Variance: 0.0412186
> Minimum: 0.00587859
> Maximum: 0.00517516
165,168c167,170
< Mean: 0.00605693
< Variance: 0.0522406
< Minimum: 0.0473652
< Maximum: 0.0412544
---
> Mean: 0.00699623
> Variance: 0.0263269
> Minimum: 0.0172653
> Maximum: 0.0443969
178,181c180,183
< Mean: 0.0556271
< Variance: 0.0598104
< Minimum: 0.135187
< Maximum: 0.0529294
---
> Mean: 0.0559648
> Variance: 0.0115742
> Minimum: 0.212353
> Maximum: 0.0293845
191,194c193,196
< Mean: 0.000824886
< Variance: 0.0613771
< Minimum: 0.0147307
< Maximum: 0.000928627
---
> Mean: 0.000773709
> Variance: 0.0417637
> Minimum: 0.00545731
> Maximum: 0
204,207c206,209
< Mean: 0.00246084
< Variance: 0.0307177
< Minimum: 0.0209267
< Maximum: 0.0477595
---
> Mean: 0.00315642
> Variance: 0.0222178
> Minimum: 0.00651462
> Maximum: 0.0265861
217,220c219,222
< Mean: 0.0388909
< Variance: 0.0188457
< Minimum: 0.0714988
< Maximum: 0.0680708
---
> Mean: 0.0155678
> Variance: 0.038029
> Minimum: 0.0251704
> Maximum: 0.0149953
243,249c245,251
< Mean: 1817.9305
< Std. Dev: 5.2314871
< 2.5% Quantile: 1810.158
< 10% Quantile: 1812.1184
< 50% Quantile: 1817.2047
< 90% Quantile: 1824.7666
< 97.5% Quantile: 1829.9301
---
> Mean: 1817.9364
> Std. Dev: 5.1296588
> 2.5% Quantile: 1810.0401
> 10% Quantile: 1811.7848
> 50% Quantile: 1817.2257
> 90% Quantile: 1824.7163
> 97.5% Quantile: 1829.917
253,259c255,261
< Mean: 1009.1812
< Std. Dev: 5.2314871
< 2.5% Quantile: 1001.4087
< 10% Quantile: 1003.3691
< 50% Quantile: 1008.4554
< 90% Quantile: 1016.0174
< 97.5% Quantile: 1021.1808
---
> Mean: 1009.1872
> Std. Dev: 5.1296588
> 2.5% Quantile: 1001.2909
> 10% Quantile: 1003.0356
> 50% Quantile: 1008.4765
> 90% Quantile: 1015.967
> 97.5% Quantile: 1021.1677
268,270c270,272
< Deviance(bar_mu): 1808.7217
< pD: 9.2088311
< DIC: 1827.1393
---
> Deviance(bar_mu): 1808.7997
> pD: 9.1367845
> DIC: 1827.0732
274,276c276,278
< Deviance(bar_mu): 999.97241
< pD: 9.2088311
< DIC: 1018.3901
---
> Deviance(bar_mu): 1000.0504
> pD: 9.1367845
> DIC: 1018.324
283c285
< Std. dev.: 4.01226e-008
---
> Std. dev.: 4.01226e-08
299,300c301,302
< const 1.41807 0.0369205 1.34712 1.42039 1.49491
< x2 0.753113 0.0627148 0.628295 0.752562 0.884668
---
> const 1.41724 0.0373261 1.33891 1.417 1.48913
> x2 0.754898 0.0646459 0.632207 0.754435 0.889085
Running 'zfileremoves.R'
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'd:/Rcompile/CRANpkg/local/2.15/BayesXsrc.Rcheck/00check.log'
for details.