- using R version 2.13.2 Patched (2011-09-30 r58249)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'sp/DESCRIPTION' ... OK
- this is package 'sp' version '0.9-94'
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Packages suggested but not available for checking:
rgdal rgeos
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'sp' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'rgdal'
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking sizes of PDF files under inst/doc ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x86_64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'base.R'
Comparing 'base.Rout' to 'base.Rout.save' ... OK
Running 'fail1.R'
Comparing 'fail1.Rout' to 'fail1.Rout.save' ...138,139c138
< Error in `[[<-`(`*tmp*`, i, value = structure(c(1022, 1141, 640, 257, :
< no such index at level 1
---
> Error in `[[<-`(`*tmp*`, i, value = value) : no such index at level 1
Running 'grid.R'
Comparing 'grid.Rout' to 'grid.Rout.save' ... OK
Running 'pass1.R'
Comparing 'pass1.Rout' to 'pass1.Rout.save' ... OK
Running 'point.in.polygon.R'
Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK
Running 'sel.R'
Comparing 'sel.Rout' to 'sel.Rout.save' ... OK
Running 'sp1.R'
Comparing 'sp1.Rout' to 'sp1.Rout.save' ... OK
Running 'spDists.R'
Comparing 'spDists.Rout' to 'spDists.Rout.save' ...15c15
< [1] -4.888534e-12
---
> [1] 0
18c18
< -9.095e-13 0.000e+00 0.000e+00 -1.020e-17 0.000e+00 4.547e-13
---
> 0 0 0 0 0 0
22c22
< [1] -4.888534e-12
---
> [1] 0
25c25
< -9.095e-13 0.000e+00 0.000e+00 -1.020e-17 0.000e+00 4.547e-13
---
> 0 0 0 0 0 0
Running 'spplot.R'
Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK
Running 'zerodist.R'
Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ... OK
** running tests for arch 'x86_64' OK
Running 'base.R'
Comparing 'base.Rout' to 'base.Rout.save' ... OK
Running 'fail1.R'
Comparing 'fail1.Rout' to 'fail1.Rout.save' ...138,139c138
< Error in `[[<-`(`*tmp*`, i, value = structure(c(1022, 1141, 640, 257, :
< no such index at level 1
---
> Error in `[[<-`(`*tmp*`, i, value = value) : no such index at level 1
Running 'grid.R'
Comparing 'grid.Rout' to 'grid.Rout.save' ... OK
Running 'pass1.R'
Comparing 'pass1.Rout' to 'pass1.Rout.save' ... OK
Running 'point.in.polygon.R'
Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK
Running 'sel.R'
Comparing 'sel.Rout' to 'sel.Rout.save' ... OK
Running 'sp1.R'
Comparing 'sp1.Rout' to 'sp1.Rout.save' ... OK
Running 'spDists.R'
Comparing 'spDists.Rout' to 'spDists.Rout.save' ...15c15
< [1] -4.888534e-12
---
> [1] 0
18c18
< -9.095e-13 0.000e+00 0.000e+00 -1.020e-17 0.000e+00 4.547e-13
---
> 0 0 0 0 0 0
22c22
< [1] -4.888534e-12
---
> [1] 0
25c25
< -9.095e-13 0.000e+00 0.000e+00 -1.020e-17 0.000e+00 4.547e-13
---
> 0 0 0 0 0 0
Running 'spplot.R'
Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK
Running 'zerodist.R'
Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... WARNING
Errors in running code in vignettes:
when running code in 'over.Rnw'
...
> lines(L, col = "green")
> text(c(0.52, 1.52), c(1.5, 1.5), c("L1", "L2"))
> library(rgeos)
When sourcing 'over.R':
Error: there is no package called 'rgeos'
Execution halted
- checking re-building of vignettes ... NOTE
Error in re-building vignettes:
...
Error: processing vignette 'over.Rnw' failed with diagnostics:
chunk 16
Error in library(rgeos) : there is no package called 'rgeos'
Execution halted
- checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/sp.Rcheck/00check.log'
for details
- elapsed time (check, wall clock): 1:55