- using R version 2.13.0 Under development (unstable) (2011-03-02 r54645)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'robust/DESCRIPTION' ... OK
- this is package 'robust' version '0.3-11'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'robust' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
- loading checks for arch 'ppc'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
- loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
lmRob.fit.compute: no visible global function definition for
'guiDisplayDialog'
lmRob.fit.compute: no visible binding for global variable 'yes.p'
plot.covfm: no visible global function definition for 'guiModify'
plot.glmfm: no visible global function definition for 'guiModify'
plot.lmfm: no visible global function definition for 'guiModify'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'robust-Ex_i386.Rout' to 'robust-Ex.Rout.save' ...
2c2,3
< Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
---
> pcaPP 0.1-1 loaded
> Scalable Robust Estimators with High Breakdown Point (version 0.5-02)
6c7,8
< The following object(s) are masked from 'package:stats':
---
>
> The following object(s) are masked from package:stats :
12,13c14,15
< > cleanEx()
< > nameEx("add1.lmRob")
---
> > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
> > cleanEx(); nameEx("add1.lmRob")
42,43c44
< > cleanEx()
< > nameEx("anova.glmRob")
---
> > cleanEx(); nameEx("anova.glmRob")
81,82c82
< > cleanEx()
< > nameEx("anova.lmRob")
---
> > cleanEx(); nameEx("anova.lmRob")
112,113c112,113
< [1,] 1 1
< [2,] 2 1 1 27.354 9.84e-08 ***
---
> [1,] 1.000 1.000
> [2,] 2.000 1.000 1 27.354 9.84e-08 ***
119,120c119
< > cleanEx()
< > nameEx("arg.names")
---
> > cleanEx(); nameEx("arg.names")
137,138c136
< > cleanEx()
< > nameEx("breslow.dat")
---
> > cleanEx(); nameEx("breslow.dat")
154,155c152
< > cleanEx()
< > nameEx("ccov")
---
> > cleanEx(); nameEx("ccov")
185,186c182
< > cleanEx()
< > nameEx("coef.glmfm")
---
> > cleanEx(); nameEx("coef.glmfm")
209,210c205
< > cleanEx()
< > nameEx("coef.lmfm")
---
> > cleanEx(); nameEx("coef.lmfm")
231,232c226
< > cleanEx()
< > nameEx("covRob")
---
> > cleanEx(); nameEx("covRob")
262,263c256
< > cleanEx()
< > nameEx("covRob.control")
---
> > cleanEx(); nameEx("covRob.control")
283,284c276
< > cleanEx()
< > nameEx("covfmDistance2Plot")
---
> > cleanEx(); nameEx("covfmDistance2Plot")
303,304c295
< > cleanEx()
< > nameEx("covfmEllipsesPlot")
---
> > cleanEx(); nameEx("covfmEllipsesPlot")
323,324c314
< > cleanEx()
< > nameEx("covfmScreePlot")
---
> > cleanEx(); nameEx("covfmScreePlot")
343,344c333
< > cleanEx()
< > nameEx("covfmSqrtMDPlot")
---
> > cleanEx(); nameEx("covfmSqrtMDPlot")
363,364c352
< > cleanEx()
< > nameEx("drop1.lmRob")
---
> > cleanEx(); nameEx("drop1.lmRob")
395,396c383
< > cleanEx()
< > nameEx("fit.models")
---
> > cleanEx(); nameEx("fit.models")
419,420c406
< > cleanEx()
< > nameEx("get.fit.models.database")
---
> > cleanEx(); nameEx("get.fit.models.database")
514,515c500
< > cleanEx()
< > nameEx("glmRob")
---
> > cleanEx(); nameEx("glmRob")
546,547c531
< > cleanEx()
< > nameEx("glmRob.mallows")
---
> > cleanEx(); nameEx("glmRob.mallows")
575,576c559
< > cleanEx()
< > nameEx("glmRob.misclass")
---
> > cleanEx(); nameEx("glmRob.misclass")
606,607c589
< > cleanEx()
< > nameEx("leuk.dat")
---
> > cleanEx(); nameEx("leuk.dat")
623,624c605
< > cleanEx()
< > nameEx("lmRob")
---
> > cleanEx(); nameEx("lmRob")
641,642c622
< > cleanEx()
< > nameEx("lmRob.RFPE")
---
> > cleanEx(); nameEx("lmRob.RFPE")
661,662c641
< > cleanEx()
< > nameEx("lmRob.control")
---
> > cleanEx(); nameEx("lmRob.control")
680,681c659
< > cleanEx()
< > nameEx("mallows.dat")
---
> > cleanEx(); nameEx("mallows.dat")
697,698c675
< > cleanEx()
< > nameEx("methods.glmRob")
---
> > cleanEx(); nameEx("methods.glmRob")
877,878c854
< > cleanEx()
< > nameEx("methods.lmRob")
---
> > cleanEx(); nameEx("methods.lmRob")
965,966c941
< > cleanEx()
< > nameEx("plot.covfm")
---
> > cleanEx(); nameEx("plot.covfm")
990,991c965
< > cleanEx()
< > nameEx("plot.lmRob")
---
> > cleanEx(); nameEx("plot.lmRob")
1009,1010c983
< > cleanEx()
< > nameEx("plot.lmfm")
---
> > cleanEx(); nameEx("plot.lmfm")
1028,1029c1001
< > cleanEx()
< > nameEx("predict.glmRob")
---
> > cleanEx(); nameEx("predict.glmRob")
1063,1064c1035
< > cleanEx()
< > nameEx("predict.lmRob")
---
> > cleanEx(); nameEx("predict.lmRob")
1103,1104c1074
< > cleanEx()
< > nameEx("print.covfm")
---
> > cleanEx(); nameEx("print.covfm")
1177,1178c1147
< > cleanEx()
< > nameEx("print.glmRob")
---
> > cleanEx(); nameEx("print.glmRob")
1221,1222c1190
< > cleanEx()
< > nameEx("print.glmfm")
---
> > cleanEx(); nameEx("print.glmfm")
1279,1280c1247
< > cleanEx()
< > nameEx("print.lmRob")
---
> > cleanEx(); nameEx("print.lmRob")
1317,1318c1284
< > cleanEx()
< > nameEx("print.lmfm")
---
> > cleanEx(); nameEx("print.lmfm")
1351,1352c1317
< > cleanEx()
< > nameEx("print.summary.covfm")
---
> > cleanEx(); nameEx("print.summary.covfm")
1455,1456c1420
< > cleanEx()
< > nameEx("print.summary.glmRob")
---
> > cleanEx(); nameEx("print.summary.glmRob")
1534,1535c1498
< > cleanEx()
< > nameEx("print.summary.glmfm")
---
> > cleanEx(); nameEx("print.summary.glmfm")
1613,1614c1576
< > cleanEx()
< > nameEx("print.summary.lmRob")
---
> > cleanEx(); nameEx("print.summary.lmRob")
1653,1654c1615
< > cleanEx()
< > nameEx("print.summary.lmfm")
---
> > cleanEx(); nameEx("print.summary.lmfm")
1742,1743c1703
< > cleanEx()
< > nameEx("stack.dat")
---
> > cleanEx(); nameEx("stack.dat")
1782,1783c1742
< > cleanEx()
< > nameEx("step.lmRob")
---
> > cleanEx(); nameEx("step.lmRob")
1854d1812
< >
1884,1885c1842
< > cleanEx()
< > nameEx("summary.covfm")
---
> > cleanEx(); nameEx("summary.covfm")
1910,1911c1867
< > cleanEx()
< > nameEx("summary.glmRob")
---
> > cleanEx(); nameEx("summary.glmRob")
1959,1960c1915
< > cleanEx()
< > nameEx("summary.glmfm")
---
> > cleanEx(); nameEx("summary.glmfm")
2009,2010c1964
< > cleanEx()
< > nameEx("summary.lmRob")
---
> > cleanEx(); nameEx("summary.lmRob")
2078,2079c2032
< > cleanEx()
< > nameEx("summary.lmfm")
---
> > cleanEx(); nameEx("summary.lmfm")
2132,2133c2085
< > cleanEx()
< > nameEx("weight.funs")
---
> > cleanEx(); nameEx("weight.funs")
2161,2162c2113
< > cleanEx()
< > nameEx("woodmod.dat")
---
> > cleanEx(); nameEx("woodmod.dat")
OK
** running examples for arch 'ppc' ... ERROR
Running examples in 'robust-Ex.R' failed
The error most likely occurred in:
> ### Name: woodmod.dat
> ### Title: Modified Wood Data
> ### Aliases: woodmod.dat
> ### Keywords: datasets
>
> ### ** Examples
>
> data(woodmod.dat)
> woodmod.dat
V1 V2 V3 V4 V5
1 0.573 0.1059 0.465 0.538 0.841
2 0.651 0.1356 0.527 0.545 0.887
3 0.606 0.1273 0.494 0.521 0.920
4 0.437 0.1591 0.446 0.423 0.992
5 0.547 0.1135 0.531 0.519 0.915
6 0.444 0.1628 0.429 0.411 0.984
7 0.489 0.1231 0.562 0.455 0.824
8 0.413 0.1673 0.418 0.430 0.978
9 0.536 0.1182 0.592 0.464 0.854
10 0.685 0.1564 0.631 0.564 0.914
11 0.664 0.1588 0.506 0.481 0.867
12 0.703 0.1335 0.519 0.484 0.812
13 0.653 0.1395 0.625 0.519 0.892
14 0.586 0.1114 0.505 0.565 0.889
15 0.534 0.1143 0.521 0.570 0.889
16 0.523 0.1320 0.505 0.612 0.919
17 0.580 0.1249 0.546 0.608 0.954
18 0.448 0.1028 0.522 0.534 0.918
19 0.417 0.1687 0.405 0.415 0.981
20 0.528 0.1057 0.424 0.566 0.909
>
> data(wood, package = "robustbase")
> stopifnot(data.matrix(woodmod.dat) ==
+ data.matrix(wood [,1:5]))
Error: data.matrix(woodmod.dat) == data.matrix(wood[, 1:5]) is not all TRUE
Execution halted
- elapsed time (check, wall clock): 1:45