• using R version 2.13.2 Patched (2011-09-30 r58132)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'rattle/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'rattle' version '2.6.16'
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Package suggested but not available for checking: pkgDepTools
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'rattle' can be installed ... OK
  • checking installed package size ... NOTE
    installed size is 5.3Mb
    sub-directories of 1Mb or more:
    data 1.1Mb
    etc 1.9Mb
    po 1.2Mb
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details:
    call: value[[3L]](cond)
    error: unable to load shared object '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/extralib/2.13/Rgraphviz/libs/i386/Rgraphviz.so':
    dlopen(/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/extralib/2.13/Rgraphviz/libs/i386/Rgraphviz.so, 6): Library not loaded: /usr/local/lib/libgvc.5.dylib
    Referenced from: /Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/extralib/2.13/Rgraphviz/libs/i386/Rgraphviz.so
    Reason: image not found

    Check that (1) graphviz is installed on your system; (2) the
    installed version of graphviz matches '2.24.0'; this is the version
    used to build this Rgraphviz package; (3) graphviz is accessible to
    R, e.g., the path to the graphviz 'bin' directory is in the system
    'PATH' variable. See additional instructions in the 'README' file of
    the Rgraphviz 'source' distribution, available at

    http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html

    Ask further questions on the Bioconductor mailing list

    http://bioconductor.org/docs/mailList.html


    executeEvaluateScore: no visible binding for global variable
    'rattle.entered.dataset'
    getExportSaveName: no visible global function definition for
    'gladeXMLNew'
    ggcorplot: no visible global function definition for 'aes'
    ggcorplot: no visible binding for global variable 'rsq'
    ggcorplot: no visible binding for global variable 'p'
    ggcorplot: no visible binding for global variable 'x_lab'
    ggcorplot: no visible global function definition for 'facet_grid'
    ggcorplot: no visible global function definition for 'opts'
    ggcorplot: no visible global function definition for 'theme_blank'
    ggcorplot: no visible global function definition for 'scale_size'
    ggcorplot: no visible global function definition for 'ggplot'
    newPlot: no visible global function definition for 'gladeXMLNew'
    newPlot: no visible global function definition for
    'gladeXMLSignalAutoconnect'
    on_about_menu_activate: no visible global function definition for
    'gladeXMLNew'
    on_about_menu_activate: no visible global function definition for
    'gladeXMLSignalAutoconnect'
    rattle: no visible global function definition for 'gladeXMLNew'
    rattle: no visible global function definition for
    'gladeXMLSignalAutoconnect'
    rattleInfo: no visible global function definition for 'biocLite'
    setupDataset: no visible binding for global variable 'inputs'
    setupDataset: no visible binding for global variable 'target'
    viewData: no visible global function definition for 'gladeXMLNew'
    viewData: no visible global function definition for
    'gladeXMLSignalAutoconnect'
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under inst/doc ... OK
  • checking examples ... OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignettes ... OK
  • checking PDF version of manual ... OK
  • elapsed time (check, wall clock): 1:55