• using R version 2.13.2 Patched (2011-09-30 r58124)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'nlme/DESCRIPTION' ... OK
• this is package 'nlme' version '3.1-103'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'nlme' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x86_64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'anova.gls.R'
  Running 'augPred_lab.R'
  Running 'augPredmissing.R'
  Running 'coef.R'
  Running 'contrMat.R'
  Running 'data.frame.R'
  Running 'deparse.R'
  Running 'getData.R'
  Running 'gls.R'
  Running 'lmList.R'
  Running 'lme.R'
  Comparing 'lme.Rout' to 'lme.Rout.save' ...1a2,17
  > R Under development (unstable) (2011-07-19 r56420)
  > Copyright (C) 2011 The R Foundation for Statistical Computing
  > ISBN 3-900051-07-0
  > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
  >
  > R is free software and comes with ABSOLUTELY NO WARRANTY.
  > You are welcome to redistribute it under certain conditions.
  > Type 'license()' or 'licence()' for distribution details.
  >
  > R is a collaborative project with many contributors.
  > Type 'contributors()' for more information and
  > 'citation()' on how to cite R or R packages in publications.
  >
  > Type 'demo()' for some demos, 'help()' for on-line help, or
  > 'help.start()' for an HTML browser interface to help.
  > Type 'q()' to quit R.
  Running 'missing.R'
  Comparing 'missing.Rout' to 'missing.Rout.save' ... OK
  Running 'nlme.R'
  Comparing 'nlme.Rout' to 'nlme.Rout.save' ... OK
  Running 'predict.lme.R'
  Running 'update.R'
  Running 'updateLme.R'
  Running 'varIdent.R'
  ** running tests for arch 'x86_64' OK
  Running 'anova.gls.R'
  Running 'augPred_lab.R'
  Running 'augPredmissing.R'
  Running 'coef.R'
  Running 'contrMat.R'
  Running 'data.frame.R'
  Running 'deparse.R'
  Running 'getData.R'
  Running 'gls.R'
  Running 'lmList.R'
  Running 'lme.R'
  Comparing 'lme.Rout' to 'lme.Rout.save' ...1a2,17
  > R Under development (unstable) (2011-07-19 r56420)
  > Copyright (C) 2011 The R Foundation for Statistical Computing
  > ISBN 3-900051-07-0
  > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
  >
  > R is free software and comes with ABSOLUTELY NO WARRANTY.
  > You are welcome to redistribute it under certain conditions.
  > Type 'license()' or 'licence()' for distribution details.
  >
  > R is a collaborative project with many contributors.
  > Type 'contributors()' for more information and
  > 'citation()' on how to cite R or R packages in publications.
  >
  > Type 'demo()' for some demos, 'help()' for on-line help, or
  > 'help.start()' for an HTML browser interface to help.
  > Type 'q()' to quit R.
  Running 'missing.R'
  Comparing 'missing.Rout' to 'missing.Rout.save' ... OK
  Running 'nlme.R'
  Comparing 'nlme.Rout' to 'nlme.Rout.save' ... OK
  Running 'predict.lme.R'
  Running 'update.R'
  Running 'updateLme.R'
  Running 'varIdent.R'
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 4:31