• using R version 2.13.2 Patched (2011-09-30 r57842)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'mboost/DESCRIPTION' ... OK
• this is package 'mboost' version '2.1-1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'mboost' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking sizes of PDF files under inst/doc ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** checking differences from 'mboost-Ex_i386.Rout' to 'mboost-Ex.Rout.save' ...
  254c254
  < 1.82015201 -0.02260988
  ---
  > 1.82015195 -0.02260988
  260c260
  < [1] 1.101182e-08
  ---
  > [1] 7.571584e-08
  263c263
  < [1] 6.282155e-14
  ---
  > [1] 2.815168e-13
  OK
  ** running examples for arch 'x86_64' ... OK
  ** checking differences from 'mboost-Ex_x86_64.Rout' to 'mboost-Ex.Rout.save' ...
  254c254
  < 1.82015201 -0.02260988
  ---
  > 1.82015195 -0.02260988
  260c260
  < [1] 1.101182e-08
  ---
  > [1] 7.571584e-08
  263c263
  < [1] 6.282155e-14
  ---
  > [1] 2.815168e-13
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'birds_Biometrics.R'
  Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ... OK
  Running 'bugfixes.R'
  Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ... OK
  Running 'mboost_illustrations.R'
  Comparing 'mboost_illustrations.Rout' to 'mboost_illustrations.Rout.save' ... OK
  Running 'regtest-baselearner.R'
  Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ... OK
  Running 'regtest-blackboost.R'
  Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67
  < 1 74.4121 nan 0.1000 nan
  < 2 65.6474 nan 0.1000 nan
  < 3 58.7034 nan 0.1000 nan
  < 4 52.6088 nan 0.1000 nan
  < 5 47.5788 nan 0.1000 nan
  < 6 43.1559 nan 0.1000 nan
  < 7 39.3997 nan 0.1000 nan
  < 8 35.9511 nan 0.1000 nan
  < 9 33.1632 nan 0.1000 nan
  < 10 30.6850 nan 0.1000 nan
  < 100 6.8694 nan 0.1000 nan
  < 200 5.0890 nan 0.1000 nan
  < 300 3.9605 nan 0.1000 nan
  < 400 3.2681 nan 0.1000 nan
  < 500 2.7537 nan 0.1000 nan
  ---
  > 1 74.4121 -nan 0.1000 -nan
  > 2 65.6474 -nan 0.1000 -nan
  > 3 58.7034 -nan 0.1000 -nan
  > 4 52.6088 -nan 0.1000 -nan
  > 5 47.5788 -nan 0.1000 -nan
  > 6 43.1559 -nan 0.1000 -nan
  > 7 39.3997 -nan 0.1000 -nan
  > 8 35.9511 -nan 0.1000 -nan
  > 9 33.1632 -nan 0.1000 -nan
  > 10 30.6850 -nan 0.1000 -nan
  > 100 6.8694 -nan 0.1000 -nan
  > 200 5.0890 -nan 0.1000 -nan
  > 300 3.9605 -nan 0.1000 -nan
  > 400 3.2681 -nan 0.1000 -nan
  > 500 2.7537 -nan 0.1000 -nan
  Running 'regtest-family.R'
  Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
  Running 'regtest-gamboost.R'
  Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...319c319,326
  < > newData <- as.data.frame(rbind(colMeans(bodyfat)[-2], colMeans(bodyfat)[-2]+1*sapply(bodyfat, sd)[-2]))
  ---
  > > newData <- as.data.frame(rbind(mean(bodyfat)[-2], mean(bodyfat)[-2]+1*sd(bodyfat)[-2]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running 'regtest-glmboost.R'
  Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ...300c300,307
  < > newData <- as.data.frame(rbind(colMeans(DF)[-1], colMeans(DF)[-2]+1*sapply(DF, sd)[-1]))
  ---
  > > newData <- as.data.frame(rbind(mean(DF)[-1], mean(DF)[-2]+1*sd(DF)[-1]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running 'regtest-hatmatrix.R'
  Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
  ** running tests for arch 'x86_64' OK
  Running 'birds_Biometrics.R'
  Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ... OK
  Running 'bugfixes.R'
  Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ... OK
  Running 'mboost_illustrations.R'
  Comparing 'mboost_illustrations.Rout' to 'mboost_illustrations.Rout.save' ... OK
  Running 'regtest-baselearner.R'
  Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ... OK
  Running 'regtest-blackboost.R'
  Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67
  < 1 74.4121 nan 0.1000 nan
  < 2 65.6474 nan 0.1000 nan
  < 3 58.7034 nan 0.1000 nan
  < 4 52.6088 nan 0.1000 nan
  < 5 47.5788 nan 0.1000 nan
  < 6 43.1559 nan 0.1000 nan
  < 7 39.3997 nan 0.1000 nan
  < 8 35.9511 nan 0.1000 nan
  < 9 33.1632 nan 0.1000 nan
  < 10 30.6850 nan 0.1000 nan
  < 100 6.8694 nan 0.1000 nan
  < 200 5.0890 nan 0.1000 nan
  < 300 3.9605 nan 0.1000 nan
  < 400 3.2681 nan 0.1000 nan
  < 500 2.7537 nan 0.1000 nan
  ---
  > 1 74.4121 -nan 0.1000 -nan
  > 2 65.6474 -nan 0.1000 -nan
  > 3 58.7034 -nan 0.1000 -nan
  > 4 52.6088 -nan 0.1000 -nan
  > 5 47.5788 -nan 0.1000 -nan
  > 6 43.1559 -nan 0.1000 -nan
  > 7 39.3997 -nan 0.1000 -nan
  > 8 35.9511 -nan 0.1000 -nan
  > 9 33.1632 -nan 0.1000 -nan
  > 10 30.6850 -nan 0.1000 -nan
  > 100 6.8694 -nan 0.1000 -nan
  > 200 5.0890 -nan 0.1000 -nan
  > 300 3.9605 -nan 0.1000 -nan
  > 400 3.2681 -nan 0.1000 -nan
  > 500 2.7537 -nan 0.1000 -nan
  Running 'regtest-family.R'
  Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
  Running 'regtest-gamboost.R'
  Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...319c319,326
  < > newData <- as.data.frame(rbind(colMeans(bodyfat)[-2], colMeans(bodyfat)[-2]+1*sapply(bodyfat, sd)[-2]))
  ---
  > > newData <- as.data.frame(rbind(mean(bodyfat)[-2], mean(bodyfat)[-2]+1*sd(bodyfat)[-2]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running 'regtest-glmboost.R'
  Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ...300c300,307
  < > newData <- as.data.frame(rbind(colMeans(DF)[-1], colMeans(DF)[-2]+1*sapply(DF, sd)[-1]))
  ---
  > > newData <- as.data.frame(rbind(mean(DF)[-1], mean(DF)[-2]+1*sd(DF)[-1]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running 'regtest-hatmatrix.R'
  Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignettes ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 17:03