- using R version 2.15.0 (2012-03-30)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'maxLik/DESCRIPTION' ... OK
- this is package 'maxLik' version '1.1-2'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package 'maxLik' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
logLikGrad: no visible binding for global variable 'lastFuncParam'
logLikGrad: no visible binding for global variable 'lastFuncGrad'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running 'BFGSR.R'
Comparing 'BFGSR.Rout' to 'BFGSR.Rout.save' ... OK
Running 'constraints.R'
Comparing 'constraints.Rout' to 'constraints.Rout.save' ... OK
Running 'examples.R'
Comparing 'examples.Rout' to 'examples.Rout.save' ... OK
Running 'finalHessian.R'
Comparing 'finalHessian.Rout' to 'finalHessian.Rout.save' ... OK
Running 'fitExpDist.R'
Comparing 'fitExpDist.Rout' to 'fitExpDist.Rout.save' ...458c458
< as.Date, as.Date.numeric
---
> as.Date
Running 'fitNormalDist.R'
Comparing 'fitNormalDist.Rout' to 'fitNormalDist.Rout.save' ...152c152
< Return code 2: successive function values within tolerance limit
---
> Return code 1: gradient close to zero
159c159
< Return code 2: successive function values within tolerance limit
---
> Return code 1: gradient close to zero
165c165
< sigma 1.816 0.128 14.1 < 2e-16 ***
---
> sigma 1.816 0.128 14.2 < 2e-16 ***
179c179
< sigma 1.6686
---
> sigma 1.6667
182,183c182,183
< mu -30.325964 -0.028422
< sigma -0.028422 -60.623506
---
> mu -30.326 0.000
> sigma 0.000 -60.652
196c196
< [1] 2
---
> [1] 1
198c198
< [1] "successive function values within tolerance limit"
---
> [1] "gradient close to zero"
201,202c201,202
< mu 3.2975e-02 -1.5459e-05
< sigma -1.5459e-05 1.6495e-02
---
> mu 0.032975 0.000000
> sigma 0.000000 0.016488
216c216
< sigma 1.816 0.128 14.2 < 2e-16 ***
---
> sigma 1.816 0.128 14.1 < 2e-16 ***
221,223c221
< [1] "Component 3: Mean relative difference: 0.0012492"
< [2] "Component 4: Mean relative difference: 0.5"
< [3] "Component 5: 1 string mismatch"
---
> [1] "Component 3: Mean relative difference: 0.00093721"
258,262c256,257
< [1] "Component 2: Mean relative difference: 1.6411e-08"
< [2] "Component 3: Mean relative difference: 1.0078"
< [3] "Component 4: Mean relative difference: 0.00094782"
< [4] "Component 5: Mean relative difference: 0.5"
< [5] "Component 6: 1 string mismatch"
---
> [1] "Component 3: Mean relative difference: 1.0121"
> [2] "Component 4: Mean relative difference: 0.00063571"
265,266c260,262
< [1] "Component 3: Mean relative difference: 1.0502"
< [2] "Component 4: Mean relative difference: 0.00052447"
---
> [1] "Component 3: Mean relative difference: 0.98526"
> [2] "Component 4: Mean relative difference: 0.00030178"
> [3] "Component 11: Mean relative difference: 1.5624e-08"
496,497c492,493
< [1] "Component 2: Mean relative difference: 2.472e-07"
< [2] "Component 3: Mean relative difference: 19.398"
---
> [1] "Component 2: Mean relative difference: 2.6258e-07"
> [2] "Component 3: Mean relative difference: 34.092"
499,501c495,499
< [4] "Component 4: Mean relative difference: 0.093625"
< [5] "Component 9: Mean relative difference: 0.85714"
< [6] "Component 10: 1 string mismatch"
---
> [4] "Component 4: Mean relative difference: 0.094592"
> [5] "Component 5: Mean relative difference: 1"
> [6] "Component 6: 1 string mismatch"
> [7] "Component 9: Mean relative difference: 0.85714"
> [8] "Component 10: 1 string mismatch"
613c611
< [2] "Component 4: Mean relative difference: 0.094309"
---
> [2] "Component 4: Mean relative difference: 0.093944"
616,617c614,615
< mu -30.326 0.000
< sigma 0.000 -60.624
---
> mu -30.298 0.000
> sigma 0.000 -60.595
627c625
< mu 1.181 0.182 6.5 7.9e-11 ***
---
> mu 1.181 0.182 6.5 8.1e-11 ***
691c689
< [1] "Component 3: Mean relative difference: 0.00065265"
---
> [1] "Component 3: Mean relative difference: 0.00015243"
812,813c810,811
< [1] "Component 3: Mean relative difference: 0.00065222"
< [2] "Component 4: Mean relative difference: 0.00032266"
---
> [1] "Component 3: Mean relative difference: 0.00015241"
> [2] "Component 4: Mean relative difference: 0.00030295"
819,820c817,818
< mu -3.0307e+01 9.2728e-06
< sigma 9.2734e-06 -6.0613e+01
---
> mu -3.0307e+01 9.2731e-06
> sigma 9.2760e-06 -6.0613e+01
935,936c933,934
< mu 1.181 0.182 6.5 8e-11 ***
< sigma 1.816 0.129 14.1 <2e-16 ***
---
> mu 1.181 0.182 6.5 8.2e-11 ***
> sigma 1.816 0.128 14.1 < 2e-16 ***
950c948
< sigma 1.6679
---
> sigma 1.6727
953,954c951,952
< mu -30.297542 0.028422
< sigma 0.028422 -60.538241
---
> mu -30.269121 0.056843
> sigma 0.056843 -60.566663
972,973c970,971
< mu 3.3006e-02 1.5496e-05
< sigma 1.5496e-05 1.6518e-02
---
> mu 3.3037e-02 3.1006e-05
> sigma 3.1006e-05 1.6511e-02
977,979c975,977
< [1] "Component 2: Mean relative difference: 6.8052e-05"
< [2] "Component 3: Mean relative difference: 3592"
< [3] "Component 4: Mean relative difference: 0.0024984"
---
> [1] "Component 2: Mean relative difference: 6.806e-05"
> [2] "Component 3: Mean relative difference: 6106.9"
> [3] "Component 4: Mean relative difference: 0.0028116"
990c988
< mu 1.181 0.182 6.5 7.9e-11 ***
---
> mu 1.181 0.182 6.5 8.1e-11 ***
996,998c994,996
< [1] "Component 2: Mean relative difference: 9.347e-05"
< [2] "Component 3: Mean relative difference: 1.6615"
< [3] "Component 4: Mean relative difference: 0.0025016"
---
> [1] "Component 2: Mean relative difference: 9.3465e-05"
> [2] "Component 3: Mean relative difference: 1.6617"
> [3] "Component 4: Mean relative difference: 0.0028125"
1016c1014
< [15,] -0.391766 -0.2717778
---
> [15,] -0.391766 -0.2717779
1024c1022
< [23,] -0.676787 0.2814119
---
> [23,] -0.676787 0.2814118
1038c1036
< [37,] 0.280989 -0.4071430
---
> [37,] 0.280989 -0.4071429
1097c1095
< [96,] -0.418693 -0.2321387
---
> [96,] -0.418693 -0.2321388
1108c1106
< Initial value of the function : -326.589781090132
---
> Initial value of the function : -326.589781090133
1138c1136
< step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
---
> step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
1159,1160c1157,1158
< [1] "Component 3: Mean relative difference: 1.9416e-05"
< [2] "Component 4: Mean relative difference: 0.0014764"
---
> [1] "Component 3: Mean relative difference: 0.00012587"
> [2] "Component 4: Mean relative difference: 0.0021004"
1164,1165c1162,1163
< [1] "Component 3: Mean relative difference: 6.6842e-06"
< [2] "Component 4: Mean relative difference: 0.00067237"
---
> [1] "Component 3: Mean relative difference: 6.4387e-06"
> [2] "Component 4: Mean relative difference: 0.00065322"
1277c1275
< Initial value of the function : -326.589781090132
---
> Initial value of the function : -326.589781090133
1307c1305
< step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
---
> step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
1369,1370c1367,1368
< mu 1.181 0.182 6.5 8.2e-11 ***
< sigma 1.816 0.128 14.1 < 2e-16 ***
---
> mu 1.181 0.182 6.51 7.7e-11 ***
> sigma 1.816 0.128 14.15 < 2e-16 ***
1384c1382
< sigma 1.6715
---
> sigma 1.6679
1387,1388c1385,1386
< mu -30.269121 0.028422
< sigma 0.028422 -60.623506
---
> mu -30.354386 -0.028422
> sigma -0.028422 -60.651928
1404,1405c1402,1403
< mu 3.3037e-02 1.5489e-05
< sigma 1.5489e-05 1.6495e-02
---
> mu 3.2944e-02 -1.5438e-05
> sigma -1.5438e-05 1.6488e-02
1410,1412c1408,1410
< [2] "Component 2: Mean relative difference: 6.548e-07"
< [3] "Component 3: Mean relative difference: 41.721"
< [4] "Component 4: Mean relative difference: 0.0056127"
---
> [2] "Component 2: Mean relative difference: 6.3918e-07"
> [3] "Component 3: Mean relative difference: 69.8"
> [4] "Component 4: Mean relative difference: 0.0028116"
1429c1427
< mu 1.181 0.182 6.5 8.1e-11 ***
---
> mu 1.181 0.182 6.5 8.2e-11 ***
1435,1436c1433,1434
< [1] "Component 3: Mean relative difference: 0.00063978"
< [2] "Component 4: Mean relative difference: 0.00125"
---
> [1] "Component 3: Mean relative difference: 0.00040276"
> [2] "Component 4: Mean relative difference: 0.0046729"
1561,1562c1559,1560
< [1] "Component 3: Mean relative difference: 0.00041338"
< [2] "Component 4: Mean relative difference: 0.0011514"
---
> [1] "Component 3: Mean relative difference: 0.00048382"
> [2] "Component 4: Mean relative difference: 0.0015721"
1567c1565
< [4] "Component 4: Mean relative difference: 2.4728e-06"
---
> [4] "Component 4: Mean relative difference: 2.4729e-06"
1739,1740c1737,1738
< mu 1.181 0.182 6.5 8.3e-11 ***
< sigma 1.817 0.128 14.1 < 2e-16 ***
---
> mu 1.181 0.182 6.5 8.1e-11 ***
> sigma 1.817 0.129 14.1 < 2e-16 ***
1754c1752
< sigma 1.6681
---
> sigma 1.6679
1757,1758c1755,1756
< mu -30.269 0.000
< sigma 0.000 -60.595
---
> mu -30.297542 0.028422
> sigma 0.028422 -60.538241
1774,1775c1772,1773
< mu 0.033037 0.000000
< sigma 0.000000 0.016503
---
> mu 3.3006e-02 1.5496e-05
> sigma 1.5496e-05 1.6518e-02
1780,1782c1778,1780
< [2] "Component 2: Mean relative difference: 0.00011984"
< [3] "Component 3: Mean relative difference: 8068.5"
< [4] "Component 4: Mean relative difference: 0.0015615"
---
> [2] "Component 2: Mean relative difference: 0.00011983"
> [3] "Component 3: Mean relative difference: 13715"
> [4] "Component 4: Mean relative difference: 0.0021868"
1805,1806c1803,1804
< [1] "Component 3: Mean relative difference: 1.5236e-06"
< [2] "Component 4: Mean relative difference: 0.0037559"
---
> [1] "Component 3: Mean relative difference: 1.7799e-06"
> [2] "Component 4: Mean relative difference: 0.0025016"
1881c1879
< [72,] -1.454152 3.2909172
---
> [72,] -1.454153 3.2909172
1931,1932c1929,1930
< [1] "Component 3: Mean relative difference: 1.7481e-06"
< [2] "Component 4: Mean relative difference: 0.00059006"
---
> [1] "Component 3: Mean relative difference: 1.8393e-06"
> [2] "Component 4: Mean relative difference: 0.0013598"
2112c2110
< sigma 1.6735
---
> sigma 1.6727
2116c2114
< sigma 0.056843 -60.595085
---
> sigma 0.056843 -60.566663
2132,2133c2130,2131
< mu 3.3037e-02 3.0992e-05
< sigma 3.0992e-05 1.6503e-02
---
> mu 3.3037e-02 3.1006e-05
> sigma 3.1006e-05 1.6511e-02
2139,2141c2137,2139
< [3] "Component 2: Mean relative difference: 0.0003349"
< [4] "Component 3: Mean relative difference: 16334"
< [5] "Component 4: Mean relative difference: 0.0028107"
---
> [3] "Component 2: Mean relative difference: 0.00033492"
> [4] "Component 3: Mean relative difference: 27769"
> [5] "Component 4: Mean relative difference: 0.0028116"
2159c2157
< sigma 1.817 0.128 14.15 < 2e-16 ***
---
> sigma 1.817 0.128 14.14 < 2e-16 ***
2164,2165c2162,2163
< [1] "Component 3: Mean relative difference: 1.0972e-06"
< [2] "Component 4: Mean relative difference: 0.0024992"
---
> [1] "Component 3: Mean relative difference: 7.0334e-07"
> [2] "Component 4: Mean relative difference: 0.001875"
2290,2291c2288,2289
< [1] "Component 3: Mean relative difference: 1.0721e-06"
< [2] "Component 4: Mean relative difference: 0.0010711"
---
> [1] "Component 3: Mean relative difference: 7.2846e-07"
> [2] "Component 4: Mean relative difference: 0.001384"
2432,2433c2430,2431
< mu 1.200 0.181 6.62 3.5e-11 ***
< sigma 1.813 0.128 14.18 < 2e-16 ***
---
> mu 1.200 0.181 6.62 3.6e-11 ***
> sigma 1.813 0.128 14.19 < 2e-16 ***
2441c2439
< [4] "Component 4: Mean relative difference: 0.0214"
---
> [4] "Component 4: Mean relative difference: 0.022005"
2497c2495
< sigma NA -59.97
---
> sigma NA -60.027
2513c2511
< sigma 0 0.016675
---
> sigma 0 0.016659
2539c2537
< sigma 1.825 0.129 14.1 <2e-16 ***
---
> sigma 1.825 0.129 14.2 <2e-16 ***
2544,2545c2542,2543
< [1] "Component 3: Mean relative difference: 0.13281"
< [2] "Component 4: Mean relative difference: 0.00047393"
---
> [1] "Component 3: Mean relative difference: 0.28906"
> [2] "Component 4: Mean relative difference: 0.00047348"
2548c2546
< NA 2.8422e-08
---
> NA -2.8422e-08
2551c2549
< NA 2.4647e-08
---
> NA -3.6637e-08
2682,2683c2680,2681
< [1] "Component 3: Mean relative difference: 0.99998"
< [2] "Component 4: Mean relative difference: 0.00081525"
---
> [1] "Component 3: Mean relative difference: 1"
> [2] "Component 4: Mean relative difference: 0.00013249"
2686c2684
< NA 2.8422e-08
---
> NA -2.8422e-08
2689c2687
< NA 5.4712e-13
---
> NA 5.5422e-13
2693c2691
< sigma NA -59.97
---
> sigma NA -60.027
2700,2701c2698,2699
< [1] "Component 3: Mean relative difference: 0.99998"
< [2] "Component 4: Mean relative difference: 0.00034115"
---
> [1] "Component 3: Mean relative difference: 1"
> [2] "Component 4: Mean relative difference: 0.00060569"
2704c2702
< NA 2.4647e-08
---
> NA -3.6637e-08
2707c2705
< NA 5.4839e-13
---
> NA 5.5395e-13
2711c2709
< sigma NA -59.998
---
> sigma NA -60.055
2910,2911c2908,2909
< [1] "Component 2: Mean relative difference: 7.6899e-08"
< [2] "Component 3: Mean relative difference: 298.54"
---
> [1] "Component 2: Mean relative difference: 7.6903e-08"
> [2] "Component 3: Mean relative difference: 295.63"
2913c2911
< [4] "Component 4: Mean relative difference: 0.066481"
---
> [4] "Component 4: Mean relative difference: 0.067365"
2916c2914
< NA 2.8422e-08
---
> NA -2.8422e-08
2919c2917
< NA -8.4566e-06
---
> NA -8.4308e-06
2923c2921
< sigma NA -59.97
---
> sigma NA -60.027
3071c3069
< [1] "Component 3: Mean relative difference: 0.0011859"
---
> [1] "Component 3: Mean relative difference: 0.0018656"
3126c3124
< mu -30.0133 -5.9401
---
> mu -29.9849 -5.9401
3153,3154c3151,3152
< [1] "Component 3: Mean relative difference: 8.7205e-08"
< [2] "Component 4: Mean relative difference: 0.0011154"
---
> [1] "Component 3: Mean relative difference: 9.6699e-08"
> [2] "Component 4: Mean relative difference: 0.0011158"
3283c3281
< BFGS maximisation, 27 iterations
---
> BFGS maximisation, 29 iterations
3295c3293,3294
< [1] "Component 4: Mean relative difference: 0.00020974"
---
> [1] "Component 3: Mean relative difference: 9.379e-08"
> [2] "Component 4: Mean relative difference: 0.00041067"
3299c3298
< [1] TRUE
---
> [1] "Component 3: Mean relative difference: 1.6539e-08"
3313c3312
< [11,] 0.7346779 0.437486
---
> [11,] 0.7346780 0.437486
3328c3327
< [26,] -1.0123313 1.322948
---
> [26,] -1.0123314 1.322948
3335c3334
< [33,] 0.5372428 -0.020927
---
> [33,] 0.5372428 -0.020926
3372c3371
< [70,] 1.2304341 2.215876
---
> [70,] 1.2304341 2.215877
3402c3401
< [100,] -0.6160444 0.144973
---
> [100,] -0.6160445 0.144973
3482,3483c3481,3482
< mu -30.0133 -5.9401
< sigma -5.9401 -60.0551
---
> mu -30.0417 -5.9686
> sigma -5.9686 -60.0551
3505,3506c3504,3505
< [2] "Component 3: Mean relative difference: 0.0008126"
< [3] "Component 4: Mean relative difference: 0.00047348"
---
> [2] "Component 3: Mean relative difference: 0.00081259"
> [3] "Component 4: Mean relative difference: 0.0013947"
3514c3513
< [1] "Component 4: Mean relative difference: 0.0020353"
---
> [1] TRUE
3676c3675
< [1] "Component 4: Mean relative difference: 0.00037194"
---
> [1] "Component 4: Mean relative difference: 0.00099652"
3860c3859
< sigma -5.9401 -60.0267
---
> sigma -5.9401 -59.9982
3877c3876
< sigma 0 0.016659
---
> sigma 0 0.016667
3881,3883c3880,3882
< [1] "Component 2: Mean relative difference: 8.9402e-06"
< [2] "Component 3: Mean relative difference: 0.00019841"
< [3] "Component 4: Mean relative difference: 0.00094697"
---
> [1] "Component 2: Mean relative difference: 8.9399e-06"
> [2] "Component 3: Mean relative difference: 0.00019839"
> [3] "Component 4: Mean relative difference: 0.00047348"
3887c3886
< [1] "Component 4: Mean relative difference: 0.00063151"
---
> [1] "Component 4: Mean relative difference: 0.00094757"
4013c4012
< [1] "Component 4: Mean relative difference: 0.00039275"
---
> [1] "Component 4: Mean relative difference: 0.00056838"
4165,4166c4164,4165
< mu 0.820 0.174 4.71 2.5e-06 ***
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> mu 0.820 0.174 4.7 2.5e-06 ***
> sigma 1.680 0.107 15.7 < 2e-16 ***
4184c4183
< sigma 3.6106
---
> sigma 3.6086
4187,4188c4186,4187
< mu -35.442 -15.234
< sigma -15.234 -93.706
---
> mu -35.413 -15.206
> sigma -15.206 -93.621
4204,4205c4203,4204
< mu 0.0303350 -0.0049316
< sigma -0.0049316 0.0114734
---
> mu 0.0303547 -0.0049301
> sigma -0.0049301 0.0114821
4219,4220c4218,4219
< mu 0.820 0.174 4.71 2.5e-06 ***
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> mu 0.820 0.174 4.7 2.6e-06 ***
> sigma 1.680 0.107 15.7 < 2e-16 ***
4229,4231c4228,4230
< [1] "Component 3: Mean relative difference: 1.4957e-08"
< [2] "Component 4: Mean relative difference: 0.00071225"
< [3] "Component 11: Component 2: Mean relative difference: 7.1367e-07"
---
> [1] "Component 3: Mean relative difference: 2.0253e-08"
> [2] "Component 4: Mean relative difference: 0.00066079"
> [3] "Component 11: Component 2: Mean relative difference: 7.9943e-07"
4343,4346c4342,4345
< [1] "Component 2: Mean relative difference: 2.7021e-08"
< [2] "Component 3: Mean relative difference: 1.3164e-07"
< [3] "Component 4: Mean relative difference: 0.00048736"
< [4] "Component 11: Component 2: Mean relative difference: 4.8053e-06"
---
> [1] "Component 2: Mean relative difference: 2.6426e-08"
> [2] "Component 3: Mean relative difference: 1.2831e-07"
> [3] "Component 4: Mean relative difference: 0.00058164"
> [4] "Component 11: Component 2: Mean relative difference: 4.753e-06"
4483,4484c4482,4483
< mu 0.820 0.174 4.71 2.5e-06 ***
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> mu 0.820 0.174 4.7 2.6e-06 ***
> sigma 1.680 0.107 15.7 < 2e-16 ***
4502c4501
< sigma 3.61
---
> sigma 3.6128
4505,4506c4504,4505
< mu -35.442 -15.234
< sigma -15.234 -93.678
---
> mu -35.385 -15.206
> sigma -15.206 -93.678
4522,4523c4521,4522
< mu 0.0303357 -0.0049332
< sigma -0.0049332 0.0114771
---
> mu 0.0303795 -0.0049311
> sigma -0.0049311 0.0114753
4528,4530c4527,4529
< [2] "Component 2: Mean relative difference: 5.2841e-06"
< [3] "Component 3: Mean relative difference: 2.6948e-05"
< [4] "Component 4: Mean relative difference: 0.00030331"
---
> [2] "Component 2: Mean relative difference: 5.2847e-06"
> [3] "Component 3: Mean relative difference: 2.6951e-05"
> [4] "Component 4: Mean relative difference: 0.00066079"
4546c4545
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> sigma 1.680 0.107 15.68 < 2e-16 ***
4555c4554
< [1] "Component 4: Mean relative difference: 0.00091575"
---
> [1] "Component 4: Mean relative difference: 0.0017279"
4667c4666
< [1] "Component 4: Mean relative difference: 0.00032168"
---
> [1] "Component 4: Mean relative difference: 0.00048537"
4740c4739
< [4] "Component 4: Mean relative difference: 0.019765"
---
> [4] "Component 4: Mean relative difference: 0.020143"
4763c4762
< mu 0.812 0.175 4.65 3.4e-06 ***
---
> mu 0.812 0.175 4.64 3.4e-06 ***
4776c4775
< [4] "Component 4: Mean relative difference: 0.026157"
---
> [4] "Component 4: Mean relative difference: 0.026522"
4800c4799
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> sigma 1.680 0.107 15.69 < 2e-16 ***
4820c4819
< sigma 3.6139
---
> sigma 3.6106
4823,4824c4822,4823
< mu -35.442 -15.262
< sigma -15.262 -93.706
---
> mu -35.442 -15.234
> sigma -15.234 -93.706
4839,4840c4838,4839
< mu 0.0303435 -0.0049422
< sigma -0.0049422 0.0114766
---
> mu 0.0303350 -0.0049316
> sigma -0.0049316 0.0114734
4854c4853
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> sigma 1.680 0.107 15.68 < 2e-16 ***
4865c4864
< [1] "Component 4: Mean relative difference: 0.0018622"
---
> [1] "Component 4: Mean relative difference: 0.00060661"
5001c5000
< [4] "Component 4: Mean relative difference: 0.025143"
---
> [4] "Component 4: Mean relative difference: 0.024796"
5011c5010
< [4] "Component 4: Mean relative difference: 0.024796"
---
> [4] "Component 4: Mean relative difference: 0.025161"
5022c5021
< [1] TRUE
---
> [1] "Component 11: Component 2: Mean relative difference: 4.9945e-08"
5136c5135
< [4] "Component 4: Mean relative difference: 0.024948"
---
> [4] "Component 4: Mean relative difference: 0.024595"
5152c5151
< [2] "Component 11: Component 2: Mean relative difference: 2.305e-08"
---
> [2] "Component 11: Component 2: Mean relative difference: 5.8452e-08"
5162c5161
< [4] "Component 4: Mean relative difference: 0.024948"
---
> [4] "Component 4: Mean relative difference: 0.024595"
5214c5213
< sigma 3.6148
---
> sigma 3.6106
5217,5218c5216,5217
< mu -35.413 -15.234
< sigma -15.234 -93.763
---
> mu -35.442 -15.234
> sigma -15.234 -93.706
5233,5234c5232,5233
< mu 0.0303598 -0.0049327
< sigma -0.0049327 0.0114666
---
> mu 0.0303350 -0.0049316
> sigma -0.0049316 0.0114734
5240d5238
< [3] "Component 4: Mean relative difference: 0.00089"
5377c5375
< [4] "Component 4: Mean relative difference: 0.027743"
---
> [4] "Component 4: Mean relative difference: 0.027926"
5420c5418
< [4] "Component 4: Mean relative difference: 0.02715"
---
> [4] "Component 4: Mean relative difference: 0.027325"
5450c5448
< BFGS maximisation, 31 iterations
---
> BFGS maximisation, 33 iterations
5457c5455
< BFGS maximisation, 31 iterations
---
> BFGS maximisation, 33 iterations
5464c5462
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> sigma 1.680 0.107 15.69 < 2e-16 ***
5472c5470
< 10 outer iterations, barrier value 2.07e-10
---
> 10 outer iterations, barrier value 2.0699e-10
5484c5482
< sigma 3.6092
---
> sigma 3.6098
5488c5486
< sigma -15.206 -93.650
---
> sigma -15.206 -93.678
5495c5493
< 31
---
> 33
5504,5505c5502,5503
< mu 0.0303540 -0.0049285
< sigma -0.0049285 0.0114783
---
> mu 0.0303533 -0.0049269
> sigma -0.0049269 0.0114746
5509c5507
< [1] "Component 4: Mean relative difference: 0.0012475"
---
> [1] "Component 4: Mean relative difference: 0.00071276"
5521,5522c5519,5520
< mu 0.820 0.174 4.7 2.5e-06 ***
< sigma 1.680 0.107 15.7 < 2e-16 ***
---
> mu 0.820 0.174 4.71 2.5e-06 ***
> sigma 1.680 0.107 15.68 < 2e-16 ***
5533c5531,5532
< [1] "Component 4: Mean relative difference: 0.00068729"
---
> [1] "Component 4: Mean relative difference: 0.0003034"
> [2] "Component 9: Mean relative difference: 0.060606"
5668,5669c5667,5668
< [4] "Component 4: Mean relative difference: 0.027441"
< [5] "Component 9: Mean relative difference: 0.032258"
---
> [4] "Component 4: Mean relative difference: 0.027257"
> [5] "Component 9: Mean relative difference: 0.090909"
5854c5853
< [3] "Component 4: Mean relative difference: 0.0012475"
---
> [3] "Component 4: Mean relative difference: 0.00089111"
5878c5877
< [1] "Component 4: Mean relative difference: 0.00091638"
---
> [1] TRUE
6125c6124
< sigma 1.684 0.108 15.64 <2e-16 ***
---
> sigma 1.684 0.108 15.63 <2e-16 ***
6145c6144
< sigma 3.6171
---
> sigma 3.6159
6149c6148
< sigma -15.291 -92.854
---
> sigma -15.291 -92.797
6165,6166c6164,6165
< mu 0.0305313 -0.0050278
< sigma -0.0050278 0.0115976
---
> mu 0.0305327 -0.0050311
> sigma -0.0050311 0.0116052
6173c6172
< [4] "Component 4: Mean relative difference: 0.0069842"
---
> [4] "Component 4: Mean relative difference: 0.0075242"
6180c6179
< [1] "Component 4: Mean relative difference: 0.00060302"
---
> [1] "Component 4: Mean relative difference: 0.00024494"
6187c6186
< problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286163). Try setting 'SUMTTol' to 0
---
> problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286165). Try setting 'SUMTTol' to 0
6212c6211
< [4] "Component 4: Mean relative difference: 0.7653"
---
> [4] "Component 4: Mean relative difference: 0.76341"
6221,6227c6220
<
< Attaching package: 'zoo'
<
< The following object(s) are masked from 'package:base':
<
< as.Date, as.Date.numeric
<
---
> Warning: locked binding of 'as.Date.numeric' will not be changed
6457c6450
< sigma 0.0000 1.6488
---
> sigma 0.0000 1.6503
6460,6461c6453,6454
< mu 3.2996e+00 -8.4565e-11
< sigma -8.4565e-11 1.6498e+00
---
> mu 3.2996e+00 -7.7766e-11
> sigma -7.7766e-11 1.6498e+00
6472c6465
< mu 3.3006 0.0000
---
> mu 3.3037 0.0000
6480,6481c6473,6474
< mu 3.2975059 -0.0015467
< sigma -0.0015467 1.6502996
---
> mu 3.2975059 -0.0015459
> sigma -0.0015459 1.6495259
6488,6489c6481,6482
< mu 3.2975 0.0000
< sigma 0.0000 1.6488
---
> mu 3.2975059 0.0015459
> sigma 0.0015459 1.6495259
6497c6490
< sigma 0 1.6667
---
> sigma 0 1.6651
6513c6506
< sigma 0 1.6667
---
> sigma 0 1.6651
6529c6522
< sigma 0 1.6667
---
> sigma 0 1.6659
6536,6537c6529,6530
< mu 3.03533 -0.49269
< sigma -0.49269 1.14746
---
> mu 3.03795 -0.49311
> sigma -0.49311 1.14753
6544,6545c6537,6538
< mu 3.03428 -0.49406
< sigma -0.49406 1.14729
---
> mu 3.03357 -0.49332
> sigma -0.49332 1.14771
6548,6549c6541,6542
< mu 3.03350 -0.49316
< sigma -0.49316 1.14734
---
> mu 3.03364 -0.49348
> sigma -0.49348 1.14809
6556,6557c6549,6550
< mu 3.03598 -0.49327
< sigma -0.49327 1.14666
---
> mu 3.03350 -0.49316
> sigma -0.49316 1.14734
6564,6565c6557,6558
< mu 3.03618 -0.49375
< sigma -0.49375 1.14778
---
> mu 3.03540 -0.49285
> sigma -0.49285 1.14783
6572,6573c6565,6566
< mu 3.03612 -0.49359
< sigma -0.49359 1.14741
---
> mu 3.03540 -0.49285
> sigma -0.49285 1.14783
6590,6592c6583,6585
< mu 0.03301594 0.00099779
< sigma 0.00099779 0.01515020
< [1] "Mean relative difference: 0.066642"
---
> mu 0.03301594 0.00099872
> sigma 0.00099872 0.01517864
> [1] "Mean relative difference: 0.06638"
6610,6612c6603,6605
< mu 0.03301589 0.00099781
< sigma 0.00099781 0.01515017
< [1] "Mean relative difference: 0.066642"
---
> mu 0.03307792 0.00099874
> sigma 0.00099874 0.01515017
> [1] "Mean relative difference: 0.067213"
6620,6622c6613,6615
< mu 0.03294097 0.00097139
< sigma 0.00097139 0.01517015
< [1] "Mean relative difference: 0.066741"
---
> mu 0.03294097 0.00097094
> sigma 0.00097094 0.01515593
> [1] "Mean relative difference: 0.066872"
6630,6632c6623,6625
< mu 0.03295130 0.00097923
< sigma 0.00097923 0.01514723
< [1] "Mean relative difference: 0.066374"
---
> mu 0.0329532 0.0010094
> sigma 0.0010094 0.0151624
> [1] "Mean relative difference: 0.066672"
6661,6662c6654,6655
< sigma 0 0.015552
< [1] "Mean relative difference: 0.071723"
---
> sigma 0 0.015522
> [1] "Mean relative difference: 0.072738"
6681,6682c6674,6675
< sigma 0 0.015553
< [1] "Mean relative difference: 0.071666"
---
> sigma 0 0.015538
> [1] "Mean relative difference: 0.072173"
6690,6692c6683,6685
< mu 0.0354661 -0.0038744
< sigma -0.0038744 0.0117841
< [1] "Mean relative difference: 0.13686"
---
> mu 0.0355274 -0.0038827
> sigma -0.0038827 0.0117852
> [1] "Mean relative difference: 0.13716"
6700,6702c6693,6695
< mu 0.0354355 -0.0039057
< sigma -0.0039057 0.0117790
< [1] "Mean relative difference: 0.13573"
---
> mu 0.0354210 -0.0038887
> sigma -0.0038887 0.0117885
> [1] "Mean relative difference: 0.13614"
6705,6707c6698,6700
< mu 0.0354212 -0.0038865
< sigma -0.0038865 0.0117814
< [1] "Mean relative difference: 0.13614"
---
> mu 0.0354234 -0.0038924
> sigma -0.0038924 0.0117967
> [1] "Mean relative difference: 0.13613"
6715,6717c6708,6710
< mu 0.0354936 -0.0038929
< sigma -0.0038929 0.0117736
< [1] "Mean relative difference: 0.13661"
---
> mu 0.0354347 -0.0038904
> sigma -0.0038904 0.0117879
> [1] "Mean relative difference: 0.1363"
6725,6727c6718,6720
< mu 0.0354834 -0.0038978
< sigma -0.0038978 0.0117901
< [1] "Mean relative difference: 0.13643"
---
> mu 0.0354679 -0.0038779
> sigma -0.0038779 0.0117920
> [1] "Mean relative difference: 0.13685"
6735,6737c6728,6730
< mu 0.0354776 -0.0038935
< sigma -0.0038935 0.0117801
< [1] "Mean relative difference: 0.13638"
---
> mu 0.0354631 -0.0038765
> sigma -0.0038765 0.0117897
> [1] "Mean relative difference: 0.13679"
Running 'methods.R'
Comparing 'methods.Rout' to 'methods.Rout.save' ... OK
Running 'numericGradient.R'
Comparing 'numericGradient.Rout' to 'numericGradient.Rout.save' ... OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/maxLik.Rcheck/00check.log'
for details.
- elapsed time (check, wall clock): 2:44