• using R version 2.13.2 Patched (2011-09-30 r58000)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'hyperdirichlet/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'hyperdirichlet' version '1.4-6'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'hyperdirichlet' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under inst/doc ... OK
  • checking examples ... OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... WARNING
    Errors in running code in vignettes:
    when running code in 'correspondence.Rnw'
    ...
    + number <- 10000
    + set.seed(0)
    + d <- rhyperdirichlet(n = number, b)
    + sam <- apply(d, 1, function(x) .... [TRUNCATED]
    Warning in readChar(con, 5L, useBytes = TRUE) :
    cannot open compressed file 'precalc.Rdata', probable reason 'No such file or directory'

    When sourcing 'correspondence.R':
    Error: cannot open the connection
    Execution halted
    when running code in 'hyperdirichlet.Rnw'
    ...
    > if (calc_from_scratch) {
    + z.prior <- triplot(g(0.5), l = plot_quality)
    + z.posterior <- triplot(g(0.5) + mult_restricted_obs(3, 1:2,
    + .... [TRUNCATED]
    Warning in readChar(con, 5L, useBytes = TRUE) :
    cannot open compressed file 'vig.Rdata', probable reason 'No such file or directory'

    When sourcing 'hyperdirichlet.R':
    Error: cannot open the connection
    Execution halted
  • checking re-building of vignettes ... NOTE
    Error in re-building vignettes:
    ...
    Loading required package: aylmer
    Loading required package: Brobdingnag

    Attaching package: 'Brobdingnag'

    The following object(s) are masked from 'package:base':

    max, min, prod, range, sum

    Loading required package: partitions
    Loading required package: polynom
    Loading required package: hyperdirichlet
    Loading required package: abind
    Loading required package: mvtnorm
    Loading required package: cubature
    Warning in readChar(con, 5L, useBytes = TRUE) :
    cannot open compressed file 'precalc.Rdata', probable reason 'No such file or directory'

    Error: processing vignette 'correspondence.Rnw' failed with diagnostics:
    chunk 10 (label = generate_data)
    Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
    Execution halted
  • checking PDF version of manual ... OK
    WARNING: There was 1 warning, see
    '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hyperdirichlet.Rcheck/00check.log'
    for details
  • elapsed time (check, wall clock): 1:17