- using R version 2.13.2 Patched (2011-09-30 r58000)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'hyperdirichlet/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'hyperdirichlet' version '1.4-6'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'hyperdirichlet' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under inst/doc ... OK
- checking examples ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... WARNING
Errors in running code in vignettes:
when running code in 'correspondence.Rnw'
...
+ number <- 10000
+ set.seed(0)
+ d <- rhyperdirichlet(n = number, b)
+ sam <- apply(d, 1, function(x) .... [TRUNCATED]
Warning in readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file 'precalc.Rdata', probable reason 'No such file or directory'
When sourcing 'correspondence.R':
Error: cannot open the connection
Execution halted
when running code in 'hyperdirichlet.Rnw'
...
> if (calc_from_scratch) {
+ z.prior <- triplot(g(0.5), l = plot_quality)
+ z.posterior <- triplot(g(0.5) + mult_restricted_obs(3, 1:2,
+ .... [TRUNCATED]
Warning in readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file 'vig.Rdata', probable reason 'No such file or directory'
When sourcing 'hyperdirichlet.R':
Error: cannot open the connection
Execution halted
- checking re-building of vignettes ... NOTE
Error in re-building vignettes:
...
Loading required package: aylmer
Loading required package: Brobdingnag
Attaching package: 'Brobdingnag'
The following object(s) are masked from 'package:base':
max, min, prod, range, sum
Loading required package: partitions
Loading required package: polynom
Loading required package: hyperdirichlet
Loading required package: abind
Loading required package: mvtnorm
Loading required package: cubature
Warning in readChar(con, 5L, useBytes = TRUE) :
cannot open compressed file 'precalc.Rdata', probable reason 'No such file or directory'
Error: processing vignette 'correspondence.Rnw' failed with diagnostics:
chunk 10 (label = generate_data)
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
Execution halted
- checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/hyperdirichlet.Rcheck/00check.log'
for details
- elapsed time (check, wall clock): 1:17