• using R version 2.13.1 Patched (2011-09-02 r56906)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'gplots/DESCRIPTION' ... OK
• this is package 'gplots' version '2.10.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'gplots' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  plotCI: multiple local function definitions for 'myarrows' with
  different formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... NOTE
  'library' or 'require' call not declared from: MASS
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under inst/doc ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running 'heatmap2Test.R'
  Comparing 'heatmap2Test.Rout' to 'heatmap2Test.Rout.save' ...6,11c6
  < gdata: Unable to load perl libaries needed by read.xls()
  < gdata: to support 'XLSX' (Excel 2007+) files.
  <
  < gdata: Run the function 'installXLSXsupport()'
  < gdata: to automatically download and install the perl
  < gdata: libaries needed to support Excel XLS and XLSX formats.
  ---
  > gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
  15,18d9
  < The following object(s) are masked from 'package:stats':
  <
  < nobs
  <
  137c128
  < .. | | |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66.1 )
  ---
  > .. | | |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66 )
  151c142
  < .. | | |--leaf "Valiant" ( value.Valiant = 35 )
  ---
  > .. | | |--leaf "Valiant" ( value.Valiant = 35.0 )
  154c145
  < .. | |--[dendrogram w/ 2 branches and 2 members at h = 14, midpoint = 0.5, value = 93.2]
  ---
  > .. | |--[dendrogram w/ 2 branches and 2 members at h = 14.0, midpoint = 0.5, value = 93.2]
  159c150
  < .. | `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 92.9]
  ---
  > .. | `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 93]
  163c154
  < .. |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 74.9]
  ---
  > .. |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 75]
  170c161
  < .. `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.3, value = 334]
  ---
  > .. `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.30, value = 334]
  Running 'heatmap_to_heatmap.2_test.R'
  Running 'plotmeans_nobars.R'
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 0:44