• using R version 2.13.2 Patched (2011-09-30 r57293)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'clValid/DESCRIPTION' ... OK
• this is package 'clValid' version '0.6-4'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: moe430a.db
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'clValid' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  BHI: no visible global function definition for 'biocLite'
  BSI: no visible global function definition for 'biocLite'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under inst/doc ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignettes ... NOTE
  Error in re-building vignettes:
  ...
  
  Welcome to Bioconductor
  
  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.
  
  Loading required package: annotate
  Loading required package: AnnotationDbi
  Loading required package: GO.db
  Loading required package: DBI
  
  Loading required package: moe430a.db
  Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
  there is no package called 'moe430a.db'
  Loading required package: RankAggreg
  Loading required package: gtools
  Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
  Running 'texi2dvi' on 'clValid.tex' failed.
  LaTeX errors:
  !pdfTeX error: pdflatex (file ./clValid-022.pdf): PDF inclusion: required page
  does not exist <0>
  ==> Fatal error occurred, no output PDF file produced!
  Calls: buildVignettes -> texi2dvi
  Execution halted
  
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 0:59