- using R version 2.14.0 (2011-10-31)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'biganalytics/DESCRIPTION' ... OK
- this is package 'biganalytics' version '1.0.14'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package 'biganalytics' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x86_64' ... ERROR
Running examples in 'biganalytics-Ex.R' failed
The error most likely occurred in:
> ### Name: bigkmeans
> ### Title: The Bigmemory Project's memory-efficient k-means cluster
> ### analysis
> ### Aliases: bigkmeans
> ### Keywords: methods
>
> ### ** Examples
>
> # Simple example (with one processor):
>
> library(bigmemory)
>
> x <- big.matrix(100000, 3, init=0, type="double")
> x[seq(1,100000,by=2),] <- rnorm(150000)
> x[seq(2,100000,by=2),] <- rnorm(150000, 5, 1)
> head(x)
[,1] [,2] [,3]
[1,] -0.6264538 0.5258908 0.7914415
[2,] 3.7479848 4.7759979 5.2414635
[3,] 0.1836433 -0.4875444 0.3921679
[4,] 4.6648687 4.1960996 4.5929311
[5,] -0.8356286 1.1382508 -0.4726670
[6,] 5.1080678 6.1393495 5.0131172
> ans <- bigkmeans(x, 1) # One cluster isn't always allowed
Loading required package: foreach
Loading required package: iterators
Loading required package: codetools
No such file or directory
BigMatrix.cpp line 358
Error in { :
task 1 failed - "Fatal error in attach: big.matrix could not be attached."
Calls: bigkmeans -> %dopar% -> <Anonymous>
Execution halted
- elapsed time (check, wall clock): 1:04