• using R version 2.14.0 (2011-10-31)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'biganalytics/DESCRIPTION' ... OK
  • this is package 'biganalytics' version '1.0.14'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
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  • checking whether package 'biganalytics' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
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  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • loading checks for arch 'x86_64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
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  • checking line endings in C/C++/Fortran sources/headers ... OK
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  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking examples ...
    ** running examples for arch 'i386' ... OK
    ** running examples for arch 'x86_64' ... ERROR
    Running examples in 'biganalytics-Ex.R' failed
    The error most likely occurred in:

    > ### Name: bigkmeans
    > ### Title: The Bigmemory Project's memory-efficient k-means cluster
    > ### analysis
    > ### Aliases: bigkmeans
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > # Simple example (with one processor):
    >
    > library(bigmemory)
    >
    > x <- big.matrix(100000, 3, init=0, type="double")
    > x[seq(1,100000,by=2),] <- rnorm(150000)
    > x[seq(2,100000,by=2),] <- rnorm(150000, 5, 1)
    > head(x)
    [,1] [,2] [,3]
    [1,] -0.6264538 0.5258908 0.7914415
    [2,] 3.7479848 4.7759979 5.2414635
    [3,] 0.1836433 -0.4875444 0.3921679
    [4,] 4.6648687 4.1960996 4.5929311
    [5,] -0.8356286 1.1382508 -0.4726670
    [6,] 5.1080678 6.1393495 5.0131172
    > ans <- bigkmeans(x, 1) # One cluster isn't always allowed
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: codetools
    No such file or directory
    BigMatrix.cpp line 358
    Error in { :
    task 1 failed - "Fatal error in attach: big.matrix could not be attached."
    Calls: bigkmeans -> %dopar% -> <Anonymous>
    Execution halted
  • elapsed time (check, wall clock): 1:04